Provide function that reads binary genotype produced by 'PLINK' <https://www.cog-genomics.org/plink/1.9/input#bed> into a R matrix, or scan the genotype one variant at a time like apply(), it also provides functions that reads and writes genotype relatedness/kinship matrices created by 'PLINK' <https://www.cog-genomics.org/plink/1.9/distance#make_rel> or 'GCTA' <https://cnsgenomics.com/software/gcta/#MakingaGRM>. Currently it does not support writing back into 'PLINK' binary, it is best used for bringing data produced by 'PLINK' and 'GCTA' into R environment.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.1) |
| Published: | 2020-04-05 |
| Author: | Xiaoran Tong [aut, cre] |
| Maintainer: | Xiaoran Tong <tongxia1 at msu.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | plinkFile results |
| Reference manual: | plinkFile.pdf |
| Package source: | plinkFile_0.1.0.tar.gz |
| Windows binaries: | r-devel: plinkFile_0.1.0.zip, r-release: plinkFile_0.1.0.zip, r-oldrel: plinkFile_0.1.0.zip |
| macOS binaries: | r-release (arm64): plinkFile_0.1.0.tgz, r-oldrel (arm64): plinkFile_0.1.0.tgz, r-release (x86_64): plinkFile_0.1.0.tgz, r-oldrel (x86_64): plinkFile_0.1.0.tgz |
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