The functions in this package take WIMP and ARMA data files generated by Oxford Nanopore EPI2ME workflows, read them, clean them, and prepare them for downstream analysis. This package was written by United States federal government employees in their official capacity. Therefore, it is not protected by copyright and is in the public domain.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | data.table, taxonomizr, phyloseq, Biobase, metagenomeSeq |
| Suggests: | rmarkdown, knitr, reshape2, testthat (≥ 3.0.0) |
| Published: | 2022-06-03 |
| Author: | Maggie Weinroth [aut], Quentin D. Read [aut, cre] |
| Maintainer: | Quentin D. Read <quentin.read at usda.gov> |
| BugReports: | https://github.com/mweinroth/epi2me2r/issues |
| License: | CC0 |
| URL: | https://mweinroth.github.io/epi2me2r/ |
| NeedsCompilation: | no |
| Citation: | epi2me2r citation info |
| Materials: | README NEWS |
| CRAN checks: | epi2me2r results |
| Reference manual: | epi2me2r.pdf |
| Vignettes: |
epi2me2r vignette |
| Package source: | epi2me2r_0.1.0.tar.gz |
| Windows binaries: | r-devel: epi2me2r_0.1.0.zip, r-release: epi2me2r_0.1.0.zip, r-oldrel: epi2me2r_0.1.0.zip |
| macOS binaries: | r-release (arm64): epi2me2r_0.1.0.tgz, r-oldrel (arm64): epi2me2r_0.1.0.tgz, r-release (x86_64): not available, r-oldrel (x86_64): not available |
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