cellOrigins: Finds RNASeq Source Tissues Using In Situ Hybridisation Data
Finds the most likely originating tissue(s) and developmental stage(s) of tissue-specific RNA sequencing data. The package identifies both pure transcriptomes and mixtures of transcriptomes. The most likely identity is found through comparisons of the sequencing data with high-throughput in situ hybridisation patterns. Typical uses are the identification of cancer cell origins, validation of cell culture strain identities, validation of single-cell transcriptomes, and validation of identity and purity of flow-sorting and dissection sequencing products.
| Version: |
0.1.3 |
| Imports: |
iterpc |
| Published: |
2020-06-05 |
| Author: |
David Molnar |
| Maintainer: |
David Molnar <dmolnar100 at icloud.com> |
| License: |
CC BY-NC-SA 4.0 |
| NeedsCompilation: |
no |
| CRAN checks: |
cellOrigins results |
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