Added ability to use NMproject-specific code completion snippets setup_code_completion(). Typing new_nm will set up parent object, child will set up child object.
fixed bug in Windows where R markdown templates weren’t being produced.
fixed minor windows bug where addins were executing models.
run_nm() checks for psn installation in first use of R session
clean_tempfiles() replaces clean_run()
Fixed failing CRAN checks in macOS systems.
Added run monitor RStudio Addin.
Revamped the manual edit interface. This is backwards incompatible. merge conflicts will now be flagged.
Resolve manual edit ‘addin’ for handling merge conflicts in manual edits (#17)
view_patch() prints to console instead of opening window
Better instructions on RStudio Addin usage.
Fixed bug were nm_create_analysis_project would fail in windows if using the home directory due to a mismatch between how ‘~’ is interpreted by R and usethis.
The first post CRAN release
Revamped the NMproject project creation template and nm_create_analysis_project() for greater customisability ability and removed dependence on options() which was causing strange behaviour.
Expanded analysis README template for new NMprojects to run analysis level tests on build. Useful for compliance checking.
Added nm_pre_commit_hook() and nm_pre_commit_hook() for custom NMproject analysis projects
Expanded model diagnostic rmarkdown template to include more ‘xpose’ plots.
Included an experimental %f>% pipe for applying functions elementwise to vector valued nm objects.
Included is_nmproject_dir(), intended for package owners of dependent packages
Renamed nm_default_dir() to nm_dir()
Removed nm.cmd_default option in favour of the more flexible nm_default_fields. See ?nm_default_fields() for help.
decision() uses usethis::ui_yeah() for prompting rather than readline().
stage() has find_replace_dir_names argument to handle custom NMproject directory structures.
Made run_id argument mandatory in child().
Added example code for first object creation in code library dialog boxes when a model file is imported
new_nm() will now fail if user tries to use a run based on one in the Models. This is for safety as the Models directory should only contain NMproject generated code.
The code library will not display .Rroj or README files.
preview() is now deprecated and removed in favour of the code library ‘Addin’
nm_default_dir is now deprecated
This is the first CRAN release of NMproject. Here are the major changes here relative to 0.5.1:
Removal and deprecation of tidyproject as an NMproject dependency.
Project libraries are now handled with renv.
Analysis project creation has been moved from tidyproject to NMproject with light wrappers around usethis project creation functionality and RStudio project templates. Analysis projects have a package-like structure.
Expanded demo based on a theophylline pharmacometric analysis and new vignette based around same demo.
The code library has been moved to NMproject. New shiny interface to code library available via RStudio ‘Addins’. The code library has been restructured to match NMproject analysis directory structure.
new_nm() function to create parent nm_list objects. This is mostly for creation of your first model. Subsequent models are generated with the child() function.
New manual edit interface via RStudio ‘Addins’. NMproject is now the only NONMEM interface (known to the author) that tracks manual edits to NONMEM code in the form of reusable patches.
Fully vectorised functions and compatibility of nm_list objects with dplyr.
Custom NMproject implementations of PsN’s bootstrap, cross-validation, stepwise covariate selection, simulation-re-estimation, and PPCs have been added.
“overwrite behaviour” RStudio ‘Addin’ has been created to allow different behaviours when modifying and rerunning a previously executed run. The default is to ask for confirmation.
This is the last version of NMproject to be developed at AZ. It has is a developmental version of the newer “beta”" interface.
This is the last release of the alpha interface developed at AZ.