INQC v2.0.6

Updates May, 2021:

• Two functions (i.e., climdex2ecad() and cost2ecad()) have been added. They provide useful tools to convert data to the ECA&D format (the main format of input data in INQC). The conversion can be performed for the COST Home and the RClimDex formats.

Updates March, 2021:

• Examples for almost all INQC functions were provided

Updates December, 2020:

• Technical conversion to a CRAN package

Updates October, 2020:

• NEW TO VERSION2: working on blended data instead of non-blended (i.e., STAID instead of SOUID): still ./raw used to store the data. Station file is always stations.txt and as pass through readecad(). stations.txt must contain all stations to be processed. ECA&D seems to to have a comprehensive station file only subset if country sets are taken
• Using assign to homofolder, so it is declared at first and does not need to be passed on from routine to routine. Implementing it progressively once it is completed, will remove this mention
• readecad() changed to adapt the ever changing ECA&D formats
• temperature() starts adapted to cope with the fact that some ECA&D formats have 4 columns (i.e., not STAID), which is added
• Added txtnblend(), which works or blended series. Here, no big efforts to isolate the “right” station: is is the same staid changing the variable name … oh, man, I love blended series!!!
• Same strategy applied to readecad(), implemented with readheader()
• Added dostats(), function which iterates QCSummary and provides metastatistics
• WARNINGS: None at this point

INQC v1.0.0

Updates August, 2020:

• jummps2() improved to avoid very short series to cause error. If the series has less than 100 valid values, it is not checked
• flatsun() has been corrected. When ran in modonube, the values returned in bad where referred to the sun file instead of the cloud file. Solved by replacing: z<-merge(x,y,all.x=TRUE,all.y=FALSE) with if(!modonube){z<-merge(x,y,all.x=TRUE,all.y=FALSE)}; if(modonube){z<-merge(x,y,all.x=FALSE,all.y=TRUE)}
• Now, listas() reads station files as csv files. Realized this is not smart for the autodownloading function, but works for sent files

Updates March, 2019:

• Function flat allows to exclude sequences for a value, i.e., excluding 0, will allow to work flat for precipitation
• Corrected error in selepe: results of badfriki were assigned to flat in the log files.
• Corrected error in selepe parametrization, inadvertently, it was -8000 instead of 8000
• Defaulting retornoracha = 500 instead of retornoracha = 1000 in precip (fine tuning with benchmark, need to evaluate false positives)
• Corrected error in the statement: rm(liston), which is executed at the end of the code. It has to be rm(liston,envir=GlobalEnv). This error was preventing the generation of new station lists and using previous ones. This caused txtn to not perform as expected
  
• Corrected problems with closetxtn. Problems that mostly affected Baboon data, due to its peculiarities. Changes should not affect real data if this is not the case, revert to a February version
• Added function sunafterdark: it compares sunshine duration to the maximum possible according to calendar and position
• Modified IQRoutliers function to exclude values (e.g., 0 for precipitation)
• Added IQRoutliers to the precip routine, with very wide limits to avoid flagging excessive number of values
• Flags for the consolidated file are being reshaped:
• Correcting error: consolidator() was only being applied to temperature!
• Corrected error in weirddate that was flagging as bad the 29-th of February of leap years
• listas() made resistant to small format changes in the input files (e.g. no header or different widths than the “official” specification)
• Evaluation of pressure results denoted that badfriki was not working well. Replaced by newfriki for pressure and, most likely, will be deprecated for other variables too
• jumps2 replaces jumps. Can be ran in two modes: split by month and with thresholds computed from the distribution of the differences or with an absolute threshold. In both cases, jumps2 does not flag BOTH elements in a jump, only the one which is most likely the culprit
• Output in QCConsolidated, adds reference to this software and is “true” ECA&D format, with corrected widths and comma-separated
• Changes to drywetlong: the parameter sueco is the threshold for dividing dry and wet. This is useful to label other binary sequences, e.g. for 0 radiation. Now it is <= and >, instead of < and >=
• txtn improved:
  1. closetxtn is not used anymore (too slow) and the pair is located by staid, eleid and parid. If sticking to ECA&D, safe enough.
  2. once values are flagged as “tx <= tn”, we look if any value in the pair is central and the other extreme to their monthly distributions. Then, only the extreme is flagged
• Added inithome(). Creates all the folders and updates stations list

Updates February, 2019:

• Variable calls made resistant to the existence of 0 series (i.e.: if TG does not exist, the call to temperature(element='TG') should not break the code anymore)
• sundur() had a parameter omitted (roundmax) which was causing the code to break. Solved

Updates January, 2019:

• Corrected many problems encountered at roundprecip(). It used to flag most of the values due to an error. This also made the code really slow. Solved.
• Made drywetlong() resistant to precipitation series with almost no data (RR_SOUID102169.txt has only ONE valid value, the rest is NA!!!)
• roundprecip() made resistant to series with no data different than 0. Returns NULL
• potpareto() made resistant to cases were all values = 0 (e.g, RR_SOUID107781.txt, with < 800 values, and all them 0)
• drywetlong(): there was a mistake in rle() usage. Example: rle$values 1 2 2 5, it was interpreted as if the strike labeled with “5” was starting in position 10, when actually runs from 6 to 10!!!
• Corrected error in bad<-flat(x$value%%10,roundmax) for some variables: roundmax was not parameterized

Updates December, 2018:

• Corrected some labels in for the temperature QC output that were erroneous (e.g., toomany instead of toomanymonth and toomanyyear)
• Added consolidator, a functions which creates a second version of the QCed data. Creates a replica of the original series, with the same name but with the QC column updated to 0 (OK)
• Corrected wrong default element flag in selepe
• Made a few corrections regarding the chain of functions txtn()<-closetxtn()<-listas()<-distHaversine() There were a few errors (hopefully, corrected) and now it is much faster just by limiting the station past as candidates to disthaversine to those in a radius of 1deg lat and 1deg lon from the candidate. For the whole ECA&D, the performance is down from 14 seconds to less than 2! ** Further improvements to the closesetation() function: does not give an error if the tries to open a file listed but non-existing
• Corrected problems in roundprecip and a bad parameterization in precipip()
• Modified potpareto() function to avoid problems with some matrices encountered in drywetlong: myfit<-fpot(xx,threshold,std.err=FALSE)
  
• Modified drywetlong to avoid problems with desertic locations with almost no rain events