Last updated on 2022-08-15 08:50:35 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| rYoutheria | 13 | ||
| zoon | 1 | 12 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, NOTE: 12
Version: 0.6.5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'SDMTools'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.6.5
Check: examples
Result: ERROR
Running examples in 'zoon-Ex.R' failed
The error most likely occurred in:
> ### Name: ModuleArguments
> ### Title: ModuleArguments
> ### Aliases: ModuleArguments
>
> ### ** Examples
>
> ModuleArguments('Background')
Error in ModuleArguments("Background") :
URL for module does not exist: https://raw.githubusercontent.com/zoonproject/modules/master/R/Background.R
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.6.5
Check: tests
Result: ERROR
Running 'test-all.R' [31s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("zoon")
Loading required package: zoon
Loading required package: raster
Loading required package: sp
[ FAIL 15 | WARN 5 | SKIP 31 | PASS 122 ]
== Skipped tests ===============================================================
* On CRAN (31)
== Failed tests ================================================================
-- Error (testCombineRasters.R:94:3): Test in workflows ------------------------
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Backtrace:
x
1. +-zoon::workflow(...) at testCombineRasters.R:94:2
2. | \-zoon:::LapplyGetModule(...)
3. | \-base::lapply(...)
4. | \-zoon (local) FUN(X[[i]], ...)
5. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
6. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
7. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
8. \-RCurl (local) `<fn>`(...)
-- Error (testGetModule.R:23:3): GetModule works -------------------------------
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Backtrace:
x
1. +-testthat::expect_that(...) at testGetModule.R:23:2
2. | \-testthat (local) condition(object)
3. | \-testthat::expect_equal(x, expected, ..., expected.label = label)
4. | \-testthat::quasi_label(enquo(object), label, arg = "object")
5. | \-rlang::eval_bare(expr, quo_get_env(quo))
6. +-zoon:::GetModule("NoProcess", FALSE)
7. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
8. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
9. \-RCurl (local) `<fn>`(...)
-- Error (testLapplyGetModule.R:7:3): LapplyGetModule works correctly ----------
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Backtrace:
x
1. +-zoon:::LapplyGetModule(list(a, b), forceReproducible = FALSE) at testLapplyGetModule.R:7:2
2. | \-base::lapply(...)
3. | \-zoon (local) FUN(X[[i]], ...)
4. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
5. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
6. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
7. \-RCurl (local) `<fn>`(...)
-- Error (testLoadModule.R:33:3): LoadModule works -----------------------------
Error in `LoadModule("NoProcess")`: Can't find 'NoProcess'. Did you mean 'NoProcess'?
Backtrace:
x
1. +-testthat::expect_that(LoadModule("NoProcess"), equals("NoProcess")) at testLoadModule.R:33:2
2. | \-testthat (local) condition(object)
3. | \-testthat::expect_equal(x, expected, ..., expected.label = label)
4. | \-testthat::quasi_label(enquo(object), label, arg = "object")
5. | \-rlang::eval_bare(expr, quo_get_env(quo))
6. \-zoon::LoadModule("NoProcess")
-- Error (testModuleArguments.R:14:3): Check returns list with all the names ---
Error in `ModuleArguments("Background")`: URL for module does not exist: https://raw.githubusercontent.com/zoonproject/modules/master/R/Background.R
Backtrace:
x
1. \-zoon::ModuleArguments("Background") at testModuleArguments.R:14:2
-- Error (testModuleHelp.R:24:3): Help as text ---------------------------------
Error in `ModuleHelp("NoProcess")`: Can't find 'NoProcess'. Did you mean 'NoProcess'?
Backtrace:
x
1. +-utils::capture.output(...) at testModuleHelp.R:24:2
2. | \-base::withVisible(...elt(i))
3. \-zoon::ModuleHelp("NoProcess")
-- Error (testModuleHelp.R:39:3): Help as NULL ---------------------------------
Error in `ModuleHelp("NoProcess")`: Can't find 'NoProcess'. Did you mean 'NoProcess'?
Backtrace:
x
1. +-utils::capture.output(...) at testModuleHelp.R:39:2
2. | \-base::withVisible(...elt(i))
3. \-zoon::ModuleHelp("NoProcess")
-- Error (testModuleHelp.R:56:3): Help as html ---------------------------------
Error in `ModuleHelp("NoProcess")`: Can't find 'NoProcess'. Did you mean 'NoProcess'?
Backtrace:
x
1. +-testthat::expect_warning(...) at testModuleHelp.R:56:2
2. | \-testthat:::quasi_capture(enquo(object), label, capture_warnings)
3. | +-testthat (local) .capture(...)
4. | | \-base::withCallingHandlers(...)
5. | \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. +-utils::capture.output(...)
7. | \-base::withVisible(...elt(i))
8. \-zoon::ModuleHelp("NoProcess")
-- Error (testModuleHelp.R:85:3): Help as pdf ----------------------------------
Error in `ModuleHelp("NoProcess")`: Can't find 'NoProcess'. Did you mean 'NoProcess'?
Backtrace:
x
1. +-testthat::expect_warning(...) at testModuleHelp.R:85:2
2. | \-testthat:::quasi_capture(enquo(object), label, capture_warnings)
3. | +-testthat (local) .capture(...)
4. | | \-base::withCallingHandlers(...)
5. | \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. +-utils::capture.output(...)
7. | \-base::withVisible(...elt(i))
8. \-zoon::ModuleHelp("NoProcess")
-- Error (testReplicate.R:27:3): Replicate workflow tests ----------------------
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Backtrace:
x
1. +-zoon::workflow(...) at testReplicate.R:27:2
2. | \-zoon:::LapplyGetModule(...)
3. | \-base::lapply(...)
4. | \-zoon (local) FUN(X[[i]], ...)
5. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
6. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
7. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
8. \-RCurl (local) `<fn>`(...)
-- Error (???): SortArgs works. ------------------------------------------------
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Backtrace:
x
1. +-zoon::workflow(...)
2. | \-zoon:::LapplyGetModule(...)
3. | \-base::lapply(...)
4. | \-zoon (local) FUN(X[[i]], ...)
5. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
6. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
7. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
8. \-RCurl (local) `<fn>`(...)
-- Error (testTransformCRS.R:79:3): occurrence data is handled as expected when CRSs vary --
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Backtrace:
x
1. +-testthat::expect_is(...) at testTransformCRS.R:79:2
2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
3. | \-rlang::eval_bare(expr, quo_get_env(quo))
4. +-zoon::workflow(...)
5. | \-zoon:::LapplyGetModule(covariate.module, forceReproducible, e)
6. | \-base::lapply(...)
7. | \-zoon (local) FUN(X[[i]], ...)
8. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
9. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
10. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
11. \-RCurl (local) `<fn>`(...)
-- Error (testWriteWorkflowMetadata.R:4:3): WriteWorkflowMetadata works. -------
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Backtrace:
x
1. +-zoon::workflow(...) at testWriteWorkflowMetadata.R:4:2
2. | \-zoon:::LapplyGetModule(...)
3. | \-base::lapply(...)
4. | \-zoon (local) FUN(X[[i]], ...)
5. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
6. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
7. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
8. \-RCurl (local) `<fn>`(...)
-- Error (testZoonCitation.R:13:3): Check returns list with all the names ------
Error in `ZoonCitation("LogisticRegression")`: URL for module does not exist: https://raw.githubusercontent.com/zoonproject/modules/master/R/LogisticRegression.R
Backtrace:
x
1. \-zoon::ZoonCitation("LogisticRegression") at testZoonCitation.R:13:2
-- Error (testaccessors.R:10:3): All accessor functions return objects of the right length and type --
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Backtrace:
x
1. +-zoon::workflow(...) at testaccessors.R:10:2
2. | \-zoon:::LapplyGetModule(...)
3. | \-base::lapply(...)
4. | \-zoon (local) FUN(X[[i]], ...)
5. | \-zoon:::GetModule(as.character(x$module), forceReproducible, environment)
6. | \-RCurl::getURL(zoonURL, ssl.verifypeer = FALSE)
7. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
8. \-RCurl (local) `<fn>`(...)
[ FAIL 15 | WARN 5 | SKIP 31 | PASS 122 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64