CRAN Package Check Results for Maintainer Julien Chiquet <julien.chiquet at inrae.fr>

CRAN Package Check Results for Maintainer ‘Julien Chiquet <julien.chiquet at inrae.fr>’

Last updated on 2022-08-15 08:50:27 CEST.

Package	ERROR	WARN	NOTE	OK
aricode		2	11
missSBM			8	5
PLNmodels			9	4
quadrupen	1		8	4
sbm			4	9

Package aricode

Current CRAN status: WARN: 2, NOTE: 11

Additional issues

clang14 clang-UBSAN

Version: 1.0.0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     aricode.cpp:22:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
     aricode.cpp:41:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang

Version: 1.0.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Package missSBM

Current CRAN status: NOTE: 8, OK: 5

Version: 1.0.2
Check: HTML version of manual
Result: NOTE
 Found the following HTML validation problems:
 SimpleSBM_fit.html:87:6: Warning: missing before 
 SimpleSBM_fit.html:87:80: Warning: inserting implicit 
 SimpleSBM_fit.html:90:6: Warning: missing before 
 SimpleSBM_fit.html:90:83: Warning: inserting implicit 
 SimpleSBM_fit.html:93:6: Warning: missing before 
 SimpleSBM_fit.html:93:85: Warning: inserting implicit 
 SimpleSBM_fit.html:96:6: Warning: missing before 
 SimpleSBM_fit.html:96:88: Warning: inserting implicit 
 SimpleSBM_fit.html:99:6: Warning: missing before 
 SimpleSBM_fit.html:99:87: Warning: inserting implicit 
 SimpleSBM_fit.html:102:6: Warning: missing before 
 SimpleSBM_fit.html:102:93: Warning: inserting implicit 
 SimpleSBM_fit.html:105:6: Warning: missing before 
 SimpleSBM_fit.html:105:85: Warning: inserting implicit 
 SimpleSBM_fit.html:87:6: Warning: trimming empty 
 SimpleSBM_fit.html:90:6: Warning: trimming empty 
 SimpleSBM_fit.html:93:6: Warning: trimming empty 
 SimpleSBM_fit.html:96:6: Warning: trimming empty 
 SimpleSBM_fit.html:99:6: Warning: trimming empty 
 SimpleSBM_fit.html:102:6: Warning: trimming empty 
 SimpleSBM_fit.html:105:6: Warning: trimming empty 
 SimpleSBM_fit_MNAR.html:81:6: Warning: missing before 
 SimpleSBM_fit_MNAR.html:81:80: Warning: inserting implicit 
 SimpleSBM_fit_MNAR.html:84:6: Warning: missing before 
 SimpleSBM_fit_MNAR.html:84:83: Warning: inserting implicit 
 SimpleSBM_fit_MNAR.html:87:6: Warning: missing before 
 SimpleSBM_fit_MNAR.html:87:85: Warning: inserting implicit 
 SimpleSBM_fit_MNAR.html:90:6: Warning: missing before 
 SimpleSBM_fit_MNAR.html:90:88: Warning: inserting implicit 
 SimpleSBM_fit_MNAR.html:93:6: Warning: missing before 
 SimpleSBM_fit_MNAR.html:93:87: Warning: inserting implicit 
 SimpleSBM_fit_MNAR.html:96:6: Warning: missing before 
 SimpleSBM_fit_MNAR.html:96:93: Warning: inserting implicit 
 SimpleSBM_fit_MNAR.html:99:6: Warning: missing before 
 SimpleSBM_fit_MNAR.html:99:85: Warning: inserting implicit 
 SimpleSBM_fit_MNAR.html:102:6: Warning: missing before 
 SimpleSBM_fit_MNAR.html:102:94: Warning: inserting implicit 
 SimpleSBM_fit_MNAR.html:105:6: Warning: missing before 
 SimpleSBM_fit_MNAR.html:105:96: Warning: inserting implicit 
 SimpleSBM_fit_MNAR.html:81:6: Warning: trimming empty 
 SimpleSBM_fit_MNAR.html:84:6: Warning: trimming empty 
 SimpleSBM_fit_MNAR.html:87:6: Warning: trimming empty 
 SimpleSBM_fit_MNAR.html:90:6: Warning: trimming empty 
 SimpleSBM_fit_MNAR.html:93:6: Warning: trimming empty 
 SimpleSBM_fit_MNAR.html:96:6: Warning: trimming empty 
 SimpleSBM_fit_MNAR.html:99:6: Warning: trimming empty 
 SimpleSBM_fit_MNAR.html:102:6: Warning: trimming empty 
 SimpleSBM_fit_MNAR.html:105:6: Warning: trimming empty 
 SimpleSBM_fit_noCov.html:80:6: Warning: missing before 
 SimpleSBM_fit_noCov.html:80:80: Warning: inserting implicit 
 SimpleSBM_fit_noCov.html:83:6: Warning: missing before 
 SimpleSBM_fit_noCov.html:83:83: Warning: inserting implicit 
 SimpleSBM_fit_noCov.html:86:6: Warning: missing before 
 SimpleSBM_fit_noCov.html:86:85: Warning: inserting implicit 
 SimpleSBM_fit_noCov.html:89:6: Warning: missing before 
 SimpleSBM_fit_noCov.html:89:88: Warning: inserting implicit 
 SimpleSBM_fit_noCov.html:92:6: Warning: missing before 
 SimpleSBM_fit_noCov.html:92:87: Warning: inserting implicit 
 SimpleSBM_fit_noCov.html:95:6: Warning: missing before 
 SimpleSBM_fit_noCov.html:95:93: Warning: inserting implicit 
 SimpleSBM_fit_noCov.html:98:6: Warning: missing before 
 SimpleSBM_fit_noCov.html:98:85: Warning: inserting implicit 
 SimpleSBM_fit_noCov.html:101:6: Warning: missing before 
 SimpleSBM_fit_noCov.html:101:94: Warning: inserting implicit 
 SimpleSBM_fit_noCov.html:104:6: Warning: missing before 
 SimpleSBM_fit_noCov.html:104:99: Warning: inserting implicit 
 SimpleSBM_fit_noCov.html:107:6: Warning: missing before 
 SimpleSBM_fit_noCov.html:107:96: Warning: inserting implicit 
 SimpleSBM_fit_noCov.html:80:6: Warning: trimming empty 
 SimpleSBM_fit_noCov.html:83:6: Warning: trimming empty 
 SimpleSBM_fit_noCov.html:86:6: Warning: trimming empty 
 SimpleSBM_fit_noCov.html:89:6: Warning: trimming empty 
 SimpleSBM_fit_noCov.html:92:6: Warning: trimming empty 
 SimpleSBM_fit_noCov.html:95:6: Warning: trimming empty 
 SimpleSBM_fit_noCov.html:98:6: Warning: trimming empty 
 SimpleSBM_fit_noCov.html:101:6: Warning: trimming empty 
 SimpleSBM_fit_noCov.html:104:6: Warning: trimming empty 
 SimpleSBM_fit_noCov.html:107:6: Warning: trimming empty 
 SimpleSBM_fit_withCov.html:80:6: Warning: missing before 
 SimpleSBM_fit_withCov.html:80:80: Warning: inserting implicit 
 SimpleSBM_fit_withCov.html:83:6: Warning: missing before 
 SimpleSBM_fit_withCov.html:83:83: Warning: inserting implicit 
 SimpleSBM_fit_withCov.html:86:6: Warning: missing before 
 SimpleSBM_fit_withCov.html:86:85: Warning: inserting implicit 
 SimpleSBM_fit_withCov.html:89:6: Warning: missing before 
 SimpleSBM_fit_withCov.html:89:88: Warning: inserting implicit 
 SimpleSBM_fit_withCov.html:92:6: Warning: missing before 
 SimpleSBM_fit_withCov.html:92:87: Warning: inserting implicit 
 SimpleSBM_fit_withCov.html:95:6: Warning: missing before 
 SimpleSBM_fit_withCov.html:95:93: Warning: inserting implicit 
 SimpleSBM_fit_withCov.html:98:6: Warning: missing before 
 SimpleSBM_fit_withCov.html:98:85: Warning: inserting implicit 
 SimpleSBM_fit_withCov.html:101:6: Warning: missing before 
 SimpleSBM_fit_withCov.html:101:94: Warning: inserting implicit 
 SimpleSBM_fit_withCov.html:104:6: Warning: missing before 
 SimpleSBM_fit_withCov.html:104:99: Warning: inserting implicit 
 SimpleSBM_fit_withCov.html:107:6: Warning: missing before 
 SimpleSBM_fit_withCov.html:107:96: Warning: inserting implicit 
 SimpleSBM_fit_withCov.html:80:6: Warning: trimming empty 
 SimpleSBM_fit_withCov.html:83:6: Warning: trimming empty 
 SimpleSBM_fit_withCov.html:86:6: Warning: trimming empty 
 SimpleSBM_fit_withCov.html:89:6: Warning: trimming empty 
 SimpleSBM_fit_withCov.html:92:6: Warning: trimming empty 
 SimpleSBM_fit_withCov.html:95:6: Warning: trimming empty 
 SimpleSBM_fit_withCov.html:98:6: Warning: trimming empty 
 SimpleSBM_fit_withCov.html:101:6: Warning: trimming empty 
 SimpleSBM_fit_withCov.html:104:6: Warning: trimming empty 
 SimpleSBM_fit_withCov.html:107:6: Warning: trimming empty 
 blockDyadSampler.html:67:6: Warning: missing before 
 blockDyadSampler.html:67:96: Warning: inserting implicit 
 blockDyadSampler.html:70:6: Warning: missing before 
 blockDyadSampler.html:70:95: Warning: inserting implicit 
 blockDyadSampler.html:73:6: Warning: missing before 
 blockDyadSampler.html:73:105: Warning: inserting implicit 
 blockDyadSampler.html:67:6: Warning: trimming empty 
 blockDyadSampler.html:70:6: Warning: trimming empty 
 blockDyadSampler.html:73:6: Warning: trimming empty 
 blockDyadSampling_fit.html:72:6: Warning: missing before 
 blockDyadSampling_fit.html:72:96: Warning: inserting implicit 
 blockDyadSampling_fit.html:75:6: Warning: missing before 
 blockDyadSampling_fit.html:75:104: Warning: inserting implicit 
 blockDyadSampling_fit.html:78:6: Warning: missing before 
 blockDyadSampling_fit.html:78:117: Warning: inserting implicit 
 blockDyadSampling_fit.html:72:6: Warning: trimming empty 
 blockDyadSampling_fit.html:75:6: Warning: trimming empty 
 blockDyadSampling_fit.html:78:6: Warning: trimming empty 
 blockNodeSampler.html:55:6: Warning: missing before 
 blockNodeSampler.html:55:96: Warning: inserting implicit 
 blockNodeSampler.html:58:6: Warning: missing before 
 blockNodeSampler.html:58:95: Warning: inserting implicit 
 blockNodeSampler.html:61:6: Warning: missing before 
 blockNodeSampler.html:61:105: Warning: inserting implicit 
 blockNodeSampler.html:55:6: Warning: trimming empty 
 blockNodeSampler.html:58:6: Warning: trimming empty 
 blockNodeSampler.html:61:6: Warning: trimming empty 
 blockNodeSampling_fit.html:72:6: Warning: missing before 
 blockNodeSampling_fit.html:72:96: Warning: inserting implicit 
 blockNodeSampling_fit.html:75:6: Warning: missing before 
 blockNodeSampling_fit.html:75:104: Warning: inserting implicit 
 blockNodeSampling_fit.html:78:6: Warning: missing before 
 blockNodeSampling_fit.html:78:117: Warning: inserting implicit 
 blockNodeSampling_fit.html:72:6: Warning: trimming empty 
 blockNodeSampling_fit.html:75:6: Warning: trimming empty 
 blockNodeSampling_fit.html:78:6: Warning: trimming empty 
 covarDyadSampling_fit.html:67:6: Warning: missing before 
 covarDyadSampling_fit.html:67:96: Warning: inserting implicit 
 covarDyadSampling_fit.html:70:6: Warning: missing before 
 covarDyadSampling_fit.html:70:104: Warning: inserting implicit 
 covarDyadSampling_fit.html:73:6: Warning: missing before 
 covarDyadSampling_fit.html:73:117: Warning: inserting implicit 
 covarDyadSampling_fit.html:76:6: Warning: missing before 
 covarDyadSampling_fit.html:76:117: Warning: inserting implicit 
 covarDyadSampling_fit.html:67:6: Warning: trimming empty 
 covarDyadSampling_fit.html:70:6: Warning: trimming empty 
 covarDyadSampling_fit.html:73:6: Warning: trimming empty 
 covarDyadSampling_fit.html:76:6: Warning: trimming empty 
 covarNodeSampling_fit.html:67:6: Warning: missing before 
 covarNodeSampling_fit.html:67:96: Warning: inserting implicit 
 covarNodeSampling_fit.html:70:6: Warning: missing before 
 covarNodeSampling_fit.html:70:104: Warning: inserting implicit 
 covarNodeSampling_fit.html:73:6: Warning: missing before 
 covarNodeSampling_fit.html:73:117: Warning: inserting implicit 
 covarNodeSampling_fit.html:76:6: Warning: missing before 
 covarNodeSampling_fit.html:76:117: Warning: inserting implicit 
 covarNodeSampling_fit.html:67:6: Warning: trimming empty 
 covarNodeSampling_fit.html:70:6: Warning: trimming empty 
 covarNodeSampling_fit.html:73:6: Warning: trimming empty 
 covarNodeSampling_fit.html:76:6: Warning: trimming empty 
 degreeSampler.html:55:6: Warning: missing before 
 degreeSampler.html:55:96: Warning: inserting implicit 
 degreeSampler.html:58:6: Warning: missing before 
 degreeSampler.html:58:95: Warning: inserting implicit 
 degreeSampler.html:61:6: Warning: missing before 
 degreeSampler.html:61:105: Warning: inserting implicit 
 degreeSampler.html:55:6: Warning: trimming empty 
 degreeSampler.html:58:6: Warning: trimming empty 
 degreeSampler.html:61:6: Warning: trimming empty 
 degreeSampling_fit.html:73:6: Warning: missing before 
 degreeSampling_fit.html:73:96: Warning: inserting implicit 
 degreeSampling_fit.html:76:6: Warning: missing before 
 degreeSampling_fit.html:76:104: Warning: inserting implicit 
 degreeSampling_fit.html:73:6: Warning: trimming empty 
 degreeSampling_fit.html:76:6: Warning: trimming empty 
 doubleStandardSampler.html:55:6: Warning: missing before 
 doubleStandardSampler.html:55:96: Warning: inserting implicit 
 doubleStandardSampler.html:58:6: Warning: missing before 
 doubleStandardSampler.html:58:95: Warning: inserting implicit 
 doubleStandardSampler.html:61:6: Warning: missing before 
 doubleStandardSampler.html:61:105: Warning: inserting implicit 
 doubleStandardSampler.html:55:6: Warning: trimming empty 
 doubleStandardSampler.html:58:6: Warning: trimming empty 
 doubleStandardSampler.html:61:6: Warning: trimming empty 
 doubleStandardSampling_fit.html:73:6: Warning: missing before 
 doubleStandardSampling_fit.html:73:96: Warning: inserting implicit 
 doubleStandardSampling_fit.html:76:6: Warning: missing before 
 doubleStandardSampling_fit.html:76:104: Warning: inserting implicit 
 doubleStandardSampling_fit.html:73:6: Warning: trimming empty 
 doubleStandardSampling_fit.html:76:6: Warning: trimming empty 
 dyadSampler.html:55:6: Warning: missing before 
 dyadSampler.html:55:96: Warning: inserting implicit 
 dyadSampler.html:58:6: Warning: missing before 
 dyadSampler.html:58:95: Warning: inserting implicit 
 dyadSampler.html:61:6: Warning: missing before 
 dyadSampler.html:61:105: Warning: inserting implicit 
 dyadSampler.html:55:6: Warning: trimming empty 
 dyadSampler.html:58:6: Warning: trimming empty 
 dyadSampler.html:61:6: Warning: trimming empty 
 dyadSampling_fit.html:67:6: Warning: missing before 
 dyadSampling_fit.html:67:96: Warning: inserting implicit 
 dyadSampling_fit.html:70:6: Warning: missing before 
 dyadSampling_fit.html:70:104: Warning: inserting implicit 
 dyadSampling_fit.html:73:6: Warning: missing before 
 dyadSampling_fit.html:73:117: Warning: inserting implicit 
 dyadSampling_fit.html:76:6: Warning: missing before 
 dyadSampling_fit.html:76:117: Warning: inserting implicit 
 dyadSampling_fit.html:67:6: Warning: trimming empty 
 dyadSampling_fit.html:70:6: Warning: trimming empty 
 dyadSampling_fit.html:73:6: Warning: trimming empty 
 dyadSampling_fit.html:76:6: Warning: trimming empty 
 networkSampler.html:78:6: Warning: missing before 
 networkSampler.html:78:96: Warning: inserting implicit 
 networkSampler.html:81:6: Warning: missing before 
 networkSampler.html:81:95: Warning: inserting implicit 
 networkSampler.html:78:6: Warning: trimming empty 
 networkSampler.html:81:6: Warning: trimming empty 
 networkSamplingDyads_fit.html:78:6: Warning: missing before 
 networkSamplingDyads_fit.html:78:96: Warning: inserting implicit 
 networkSamplingDyads_fit.html:78:6: Warning: trimming empty 
 networkSamplingNodes_fit.html:78:6: Warning: missing before 
 networkSamplingNodes_fit.html:78:96: Warning: inserting implicit 
 networkSamplingNodes_fit.html:78:6: Warning: trimming empty 
 nodeSampler.html:52:6: Warning: missing before 
 nodeSampler.html:52:96: Warning: inserting implicit 
 nodeSampler.html:55:6: Warning: missing before 
 nodeSampler.html:55:95: Warning: inserting implicit 
 nodeSampler.html:58:6: Warning: missing before 
 nodeSampler.html:58:100: Warning: inserting implicit 
 nodeSampler.html:61:6: Warning: missing before 
 nodeSampler.html:61:105: Warning: inserting implicit 
 nodeSampler.html:52:6: Warning: trimming empty 
 nodeSampler.html:55:6: Warning: trimming empty 
 nodeSampler.html:58:6: Warning: trimming empty 
 nodeSampler.html:61:6: Warning: trimming empty 
 nodeSampling_fit.html:67:6: Warning: missing before 
 nodeSampling_fit.html:67:96: Warning: inserting implicit 
 nodeSampling_fit.html:70:6: Warning: missing before 
 nodeSampling_fit.html:70:104: Warning: inserting implicit 
 nodeSampling_fit.html:73:6: Warning: missing before 
 nodeSampling_fit.html:73:117: Warning: inserting implicit 
 nodeSampling_fit.html:76:6: Warning: missing before 
 nodeSampling_fit.html:76:117: Warning: inserting implicit 
 nodeSampling_fit.html:67:6: Warning: trimming empty 
 nodeSampling_fit.html:70:6: Warning: trimming empty 
 nodeSampling_fit.html:73:6: Warning: trimming empty 
 nodeSampling_fit.html:76:6: Warning: trimming empty 
 simpleDyadSampler.html:55:6: Warning: missing before 
 simpleDyadSampler.html:55:96: Warning: inserting implicit 
 simpleDyadSampler.html:58:6: Warning: missing before 
 simpleDyadSampler.html:58:95: Warning: inserting implicit 
 simpleDyadSampler.html:61:6: Warning: missing before 
 simpleDyadSampler.html:61:105: Warning: inserting implicit 
 simpleDyadSampler.html:55:6: Warning: trimming empty 
 simpleDyadSampler.html:58:6: Warning: trimming empty 
 simpleDyadSampler.html:61:6: Warning: trimming empty 
 simpleNodeSampler.html:55:6: Warning: missing before 
 simpleNodeSampler.html:55:96: Warning: inserting implicit 
 simpleNodeSampler.html:58:6: Warning: missing before 
 simpleNodeSampler.html:58:95: Warning: inserting implicit 
 simpleNodeSampler.html:61:6: Warning: missing before 
 simpleNodeSampler.html:61:105: Warning: inserting implicit 
 simpleNodeSampler.html:55:6: Warning: trimming empty 
 simpleNodeSampler.html:58:6: Warning: trimming empty 
 simpleNodeSampler.html:61:6: Warning: trimming empty 
 snowballSampler.html:55:6: Warning: missing before 
 snowballSampler.html:55:96: Warning: inserting implicit 
 snowballSampler.html:58:6: Warning: missing before 
 snowballSampler.html:58:95: Warning: inserting implicit 
 snowballSampler.html:61:6: Warning: missing before 
 snowballSampler.html:61:105: Warning: inserting implicit 
 snowballSampler.html:55:6: Warning: trimming empty 
 snowballSampler.html:58:6: Warning: trimming empty 
 snowballSampler.html:61:6: Warning: trimming empty 
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.2
Check: installed package size
Result: NOTE
     installed size is 7.1Mb
     sub-directories of 1Mb or more:
     libs 5.0Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package PLNmodels

Current CRAN status: NOTE: 9, OK: 4

Version: 0.11.6
Check: HTML version of manual
Result: NOTE
 Found the following HTML validation problems:
 PLNLDAfit.html:105:6: Warning: missing before 
 PLNLDAfit.html:105:90: Warning: inserting implicit 
 PLNLDAfit.html:108:6: Warning: missing before 
 PLNLDAfit.html:108:98: Warning: inserting implicit 
 PLNLDAfit.html:111:6: Warning: missing before 
 PLNLDAfit.html:111:106: Warning: inserting implicit 
 PLNLDAfit.html:114:6: Warning: missing before 
 PLNLDAfit.html:114:89: Warning: inserting implicit 
 PLNLDAfit.html:117:6: Warning: missing before 
 PLNLDAfit.html:117:90: Warning: inserting implicit 
 PLNLDAfit.html:120:6: Warning: missing before 
 PLNLDAfit.html:120:90: Warning: inserting implicit 
 PLNLDAfit.html:105:6: Warning: trimming empty 
 PLNLDAfit.html:108:6: Warning: trimming empty 
 PLNLDAfit.html:111:6: Warning: trimming empty 
 PLNLDAfit.html:114:6: Warning: trimming empty 
 PLNLDAfit.html:117:6: Warning: trimming empty 
 PLNLDAfit.html:120:6: Warning: trimming empty 
 PLNPCAfamily.html:84:6: Warning: missing before 
 PLNPCAfamily.html:84:100: Warning: inserting implicit 
 PLNPCAfamily.html:87:6: Warning: missing before 
 PLNPCAfamily.html:87:92: Warning: inserting implicit 
 PLNPCAfamily.html:84:6: Warning: trimming empty 
 PLNPCAfamily.html:87:6: Warning: trimming empty 
 PLNPCAfit.html:124:6: Warning: missing before 
 PLNPCAfit.html:124:106: Warning: inserting implicit 
 PLNPCAfit.html:127:6: Warning: missing before 
 PLNPCAfit.html:127:91: Warning: inserting implicit 
 PLNPCAfit.html:130:6: Warning: missing before 
 PLNPCAfit.html:130:89: Warning: inserting implicit 
 PLNPCAfit.html:133:6: Warning: missing before 
 PLNPCAfit.html:133:90: Warning: inserting implicit 
 PLNPCAfit.html:124:6: Warning: trimming empty 
 PLNPCAfit.html:127:6: Warning: trimming empty 
 PLNPCAfit.html:130:6: Warning: trimming empty 
 PLNPCAfit.html:133:6: Warning: trimming empty 
 PLNmixturefamily.html:89:6: Warning: missing before 
 PLNmixturefamily.html:89:95: Warning: inserting implicit 
 PLNmixturefamily.html:92:6: Warning: missing before 
 PLNmixturefamily.html:92:100: Warning: inserting implicit 
 PLNmixturefamily.html:89:6: Warning: trimming empty 
 PLNmixturefamily.html:92:6: Warning: trimming empty 
 PLNnetworkfamily.html:100:6: Warning: missing before 
 PLNnetworkfamily.html:100:95: Warning: inserting implicit 
 PLNnetworkfamily.html:103:6: Warning: missing before 
 PLNnetworkfamily.html:103:100: Warning: inserting implicit 
 PLNnetworkfamily.html:106:6: Warning: missing before 
 PLNnetworkfamily.html:106:92: Warning: inserting implicit 
 PLNnetworkfamily.html:100:6: Warning: trimming empty 
 PLNnetworkfamily.html:103:6: Warning: trimming empty 
 PLNnetworkfamily.html:106:6: Warning: trimming empty 
 PLNnetworkfit.html:101:6: Warning: missing before 
 PLNnetworkfit.html:101:90: Warning: inserting implicit 
 PLNnetworkfit.html:104:6: Warning: missing before 
 PLNnetworkfit.html:104:98: Warning: inserting implicit 
 PLNnetworkfit.html:107:6: Warning: missing before 
 PLNnetworkfit.html:107:106: Warning: inserting implicit 
 PLNnetworkfit.html:110:6: Warning: missing before 
 PLNnetworkfit.html:110:91: Warning: inserting implicit 
 PLNnetworkfit.html:113:6: Warning: missing before 
 PLNnetworkfit.html:113:89: Warning: inserting implicit 
 PLNnetworkfit.html:116:6: Warning: missing before 
 PLNnetworkfit.html:116:90: Warning: inserting implicit 
 PLNnetworkfit.html:101:6: Warning: trimming empty 
 PLNnetworkfit.html:104:6: Warning: trimming empty 
 PLNnetworkfit.html:107:6: Warning: trimming empty 
 PLNnetworkfit.html:110:6: Warning: trimming empty 
 PLNnetworkfit.html:113:6: Warning: trimming empty 
 PLNnetworkfit.html:116:6: Warning: trimming empty 
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.11.6
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'biomformat', 'phyloseq', 'Wrench'
Flavor: r-release-macos-arm64

Version: 0.11.6
Check: installed package size
Result: NOTE
     installed size is 12.9Mb
     sub-directories of 1Mb or more:
     doc 2.1Mb
     libs 9.7Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.11.6
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘Wrench’
Flavor: r-release-macos-arm64

Package quadrupen

Current CRAN status: ERROR: 1, NOTE: 8, OK: 4

Version: 0.2-8
Check: HTML version of manual
Result: NOTE
 Found the following HTML validation problems:
 bounded.reg.html:204:33: Warning: unescaped & or unknown entity "&beta"
 bounded.reg.html:213:1: Warning: inserting implicit 
 bounded.reg.html:213:1: Warning: trimming empty 
 bounded.reg.html:201:34: Warning: <center> element removed from HTML5
 elastic.net.html:210:33: Warning: unescaped & or unknown entity "&beta"
 elastic.net.html:219:1: Warning: inserting implicit 
 elastic.net.html:219:1: Warning: trimming empty 
 elastic.net.html:207:48: Warning: <center> element removed from HTML5
 quadrupen-package.html:57:33: Warning: unescaped & or unknown entity "&beta"
 quadrupen-package.html:67:1: Warning: inserting implicit 
 quadrupen-package.html:67:1: Warning: trimming empty 
 quadrupen-package.html:55:2: Warning: <center> element removed from HTML5
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2-8
Check: installed package size
Result: NOTE
     installed size is 8.1Mb
     sub-directories of 1Mb or more:
     libs 7.6Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.2-8
Check: tests
Result: ERROR
 Running 'spelling.R' [0s]
 Running 'testthat.R' [54s]
 Running the tests in 'tests/testthat.R' failed.
 Complete output:
 > library(testthat)
 > library(quadrupen)
 Loading required package: Rcpp
 Loading required package: ggplot2
 Loading required package: Matrix

 ------------------------------------------------------
 'quadrupen' package version 0.2-8

 Dev version on https://github.com/jchiquet/quadrupen
 ------------------------------------------------------
 >
 > test_check("quadrupen")

 * tiny-size problem...
 Timings with warm-restart along the path
 from stratch (cholesky): 0.03
 from stratch (conjugate-gradient): 0
 CG starting from sparser solution: 0
 * small-size problem, with correlation...
 Timings with warm-restart along the path
 from stratch (cholesky): 0.67
 from stratch (conjugate-gradient): 0.57
 CG starting from sparser solution: 0.38
 Problem with 10000 predictors and 500 samples, 50 true nonzeros in beta.star.
 The densely encoded design matrix weights 19.07 Mo.
 The sparsely encoded design matrix weights 2.85 Mo.
 dense coding... took 20.82 seconds to activate 497 variables.
 sparse coding... took 16.48 seconds to activate 497 variables.
 * tiny-size problem...
 Timings with warm-restart along the path
 from stratch: 0.02
 starting from sparser solution: 0.02
 starting from more dense solution: 0
 * small-size problem, with correlation...
 Timings with warm-restart along the path
 from stratch: 0.54
 starting from sparser solution: 0.47
 starting from more dense solution: 0.66[ FAIL 1 | WARN 0 | SKIP 0 | PASS 49 ]

 ══ Failed tests ════════════════════════════════════════════════════════════════
 ── Failure (test-sparse.R:54:3): Consistency of quadrupen between sparse/non-sparse encoding of the predictors ──
 `x` not equal to `expected`.
 Attributes: < Component "monitoring": Component "it.active": Mean relative difference: 0.03846154 >
 Attributes: < Component "monitoring": Component "it.optim": Numeric: lengths (613, 612) differ >
 Backtrace:
 ▆
 1. └─testthat::expect_that(out.enet.sp, equals(out.enet.ns)) at test-sparse.R:54:2
 2. └─testthat (local) condition(object)
 3. └─testthat::expect_equal(x, expected, ..., expected.label = label)

 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 49 ]
 Error: Test failures
 Execution halted
Flavor: r-release-windows-x86_64

Package sbm

Current CRAN status: NOTE: 4, OK: 9

Version: 0.4.3
Check: HTML version of manual
Result: NOTE
 Found the following HTML validation problems:
 BipartiteSBM.html:98:6: Warning: missing before 
 BipartiteSBM.html:98:80: Warning: inserting implicit 
 BipartiteSBM.html:101:6: Warning: missing before 
 BipartiteSBM.html:101:83: Warning: inserting implicit 
 BipartiteSBM.html:98:6: Warning: trimming empty 
 BipartiteSBM.html:101:6: Warning: trimming empty 
 BipartiteSBM_fit.html:119:6: Warning: missing before 
 BipartiteSBM_fit.html:119:80: Warning: inserting implicit 
 BipartiteSBM_fit.html:122:6: Warning: missing before 
 BipartiteSBM_fit.html:122:83: Warning: inserting implicit 
 BipartiteSBM_fit.html:125:6: Warning: missing before 
 BipartiteSBM_fit.html:125:88: Warning: inserting implicit 
 BipartiteSBM_fit.html:128:6: Warning: missing before 
 BipartiteSBM_fit.html:128:91: Warning: inserting implicit 
 BipartiteSBM_fit.html:131:6: Warning: missing before 
 BipartiteSBM_fit.html:131:90: Warning: inserting implicit 
 BipartiteSBM_fit.html:134:6: Warning: missing before 
 BipartiteSBM_fit.html:134:96: Warning: inserting implicit 
 BipartiteSBM_fit.html:119:6: Warning: trimming empty 
 BipartiteSBM_fit.html:122:6: Warning: trimming empty 
 BipartiteSBM_fit.html:125:6: Warning: trimming empty 
 BipartiteSBM_fit.html:128:6: Warning: trimming empty 
 BipartiteSBM_fit.html:131:6: Warning: trimming empty 
 BipartiteSBM_fit.html:134:6: Warning: trimming empty 
 MultipartiteSBM.html:94:6: Warning: missing before 
 MultipartiteSBM.html:94:83: Warning: inserting implicit 
 MultipartiteSBM.html:94:6: Warning: trimming empty 
 MultipartiteSBM_fit.html:112:6: Warning: missing before 
 MultipartiteSBM_fit.html:112:83: Warning: inserting implicit 
 MultipartiteSBM_fit.html:115:6: Warning: missing before 
 MultipartiteSBM_fit.html:115:91: Warning: inserting implicit 
 MultipartiteSBM_fit.html:118:6: Warning: missing before 
 MultipartiteSBM_fit.html:118:92: Warning: inserting implicit 
 MultipartiteSBM_fit.html:112:6: Warning: trimming empty 
 MultipartiteSBM_fit.html:115:6: Warning: trimming empty 
 MultipartiteSBM_fit.html:118:6: Warning: trimming empty 
 MultiplexSBM_fit.html:114:6: Warning: missing before 
 MultiplexSBM_fit.html:114:83: Warning: inserting implicit 
 MultiplexSBM_fit.html:117:6: Warning: missing before 
 MultiplexSBM_fit.html:117:92: Warning: inserting implicit 
 MultiplexSBM_fit.html:120:6: Warning: missing before 
 MultiplexSBM_fit.html:120:99: Warning: inserting implicit 
 MultiplexSBM_fit.html:114:6: Warning: trimming empty 
 MultiplexSBM_fit.html:117:6: Warning: trimming empty 
 MultiplexSBM_fit.html:120:6: Warning: trimming empty 
 SimpleSBM.html:98:6: Warning: missing before 
 SimpleSBM.html:98:80: Warning: inserting implicit 
 SimpleSBM.html:101:6: Warning: missing before 
 SimpleSBM.html:101:83: Warning: inserting implicit 
 SimpleSBM.html:98:6: Warning: trimming empty 
 SimpleSBM.html:101:6: Warning: trimming empty 
 SimpleSBM_fit.html:119:6: Warning: missing before 
 SimpleSBM_fit.html:119:80: Warning: inserting implicit 
 SimpleSBM_fit.html:122:6: Warning: missing before 
 SimpleSBM_fit.html:122:83: Warning: inserting implicit 
 SimpleSBM_fit.html:125:6: Warning: missing before 
 SimpleSBM_fit.html:125:85: Warning: inserting implicit 
 SimpleSBM_fit.html:128:6: Warning: missing before 
 SimpleSBM_fit.html:128:88: Warning: inserting implicit 
 SimpleSBM_fit.html:131:6: Warning: missing before 
 SimpleSBM_fit.html:131:87: Warning: inserting implicit 
 SimpleSBM_fit.html:134:6: Warning: missing before 
 SimpleSBM_fit.html:134:93: Warning: inserting implicit 
 SimpleSBM_fit.html:119:6: Warning: trimming empty 
 SimpleSBM_fit.html:122:6: Warning: trimming empty 
 SimpleSBM_fit.html:125:6: Warning: trimming empty 
 SimpleSBM_fit.html:128:6: Warning: trimming empty 
 SimpleSBM_fit.html:131:6: Warning: trimming empty 
 SimpleSBM_fit.html:134:6: Warning: trimming empty 
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc