Last updated on 2022-08-15 08:50:26 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| marked | 6 | 7 | |
| RMark | 4 | 9 |
Current CRAN status: NOTE: 6, OK: 7
Version: 1.2.6
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘bookdown’ ‘kableExtra’ ‘knitr’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 4, OK: 9
Version: 3.0.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: Software mark not found in path.
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64
Version: 3.0.0
Check: examples
Result: ERROR
Running examples in ‘RMark-Ex.R’ failed
The error most likely occurred in:
> ### Name: Blackduck
> ### Title: Black duck known fate data
> ### Aliases: Blackduck
> ### Keywords: datasets
>
> ### ** Examples
>
>
> data(Blackduck)
> # Change BirdAge to numeric; starting with version 1.6.3 factor variables are
> # no longer allowed. They can work as in this example but they can be misleading
> # and fail if the levels are non-numeric. The real parameters will remain
> # unchanged but the betas will be different.
> Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1
> run.Blackduck=function()
+ {
+ #
+ # Process data
+ #
+ bduck.processed=process.data(Blackduck,model="Known")
+ #
+ # Create default design data
+ #
+ bduck.ddl=make.design.data(bduck.processed)
+ #
+ # Add occasion specific data min < 0; I have no idea what it is
+ #
+ bduck.ddl$S$min=c(4,6,7,7,7,6,5,5)
+ #
+ # Define range of models for S
+ #
+ S.dot=list(formula=~1)
+ S.time=list(formula=~time)
+ S.min=list(formula=~min)
+ S.BirdAge=list(formula=~BirdAge)
+ #
+ # Note that in the following model in the MARK example, the covariates
+ # have been standardized. That means that the beta parameters will be different
+ # for BirdAge, Weight and their interaction but the likelihood and real parameter
+ # estimates are the same.
+ #
+ S.BirdAgexWeight.min=list(formula=~min+BirdAge*Weight)
+ S.BirdAge.Weight=list(formula=~BirdAge+Weight)
+ #
+ # Create model list and run assortment of models
+ #
+ model.list=create.model.list("Known")
+ bduck.results=mark.wrapper(model.list,data=bduck.processed,ddl=bduck.ddl,
+ invisible=FALSE,threads=1,delete=TRUE)
+
+ #
+ # Return model table and list of models
+ #
+ return(bduck.results)
+ }
> bduck.results=run.Blackduck()
S.BirdAge
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.BirdAge.Weight
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.BirdAgexWeight.min
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.dot
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.min
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.time
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
No mark models found
Error in collect.models() :
Calls: run.Blackduck -> mark.wrapper -> collect.models
Execution halted
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64
Version: 2.2.7
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: Software mark not found in path.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 2.2.7
Check: examples
Result: ERROR
Running examples in ‘RMark-Ex.R’ failed
The error most likely occurred in:
> ### Name: Blackduck
> ### Title: Black duck known fate data
> ### Aliases: Blackduck
> ### Keywords: datasets
>
> ### ** Examples
>
>
> data(Blackduck)
> # Change BirdAge to numeric; starting with version 1.6.3 factor variables are
> # no longer allowed. They can work as in this example but they can be misleading
> # and fail if the levels are non-numeric. The real parameters will remain
> # unchanged but the betas will be different.
> Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1
> run.Blackduck=function()
+ {
+ #
+ # Process data
+ #
+ bduck.processed=process.data(Blackduck,model="Known")
+ #
+ # Create default design data
+ #
+ bduck.ddl=make.design.data(bduck.processed)
+ #
+ # Add occasion specific data min < 0; I have no idea what it is
+ #
+ bduck.ddl$S$min=c(4,6,7,7,7,6,5,5)
+ #
+ # Define range of models for S
+ #
+ S.dot=list(formula=~1)
+ S.time=list(formula=~time)
+ S.min=list(formula=~min)
+ S.BirdAge=list(formula=~BirdAge)
+ #
+ # Note that in the following model in the MARK example, the covariates
+ # have been standardized. That means that the beta parameters will be different
+ # for BirdAge, Weight and their interaction but the likelihood and real parameter
+ # estimates are the same.
+ #
+ S.BirdAgexWeight.min=list(formula=~min+BirdAge*Weight)
+ S.BirdAge.Weight=list(formula=~BirdAge+Weight)
+ #
+ # Create model list and run assortment of models
+ #
+ model.list=create.model.list("Known")
+ bduck.results=mark.wrapper(model.list,data=bduck.processed,ddl=bduck.ddl,
+ invisible=FALSE,threads=1)
+
+ #
+ # Return model table and list of models
+ #
+ return(bduck.results)
+ }
> bduck.results=run.Blackduck()
S.BirdAge
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.BirdAge.Weight
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.BirdAgexWeight.min
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.dot
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.min
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
S.time
sh: mark: command not found
Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, :
error in running command
Error in run.mark.model(model, invisible = invisible, adjust = adjust, :
Output file does not exist. Unable to find or run mark.exe
No mark models found
Error in collect.models() :
Calls: run.Blackduck -> mark.wrapper -> collect.models
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64