Last updated on 2022-08-15 08:50:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 17.59 | 154.69 | 172.28 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 15.64 | 112.84 | 128.48 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 216.28 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 211.78 | OK | |||
| r-devel-windows-x86_64 | 0.1.0 | 23.00 | 0.00 | 23.00 | FAIL | |
| r-patched-linux-x86_64 | 0.1.0 | 16.11 | 143.63 | 159.74 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 15.51 | 143.48 | 158.99 | OK | |
| r-release-macos-arm64 | 0.1.0 | 58.00 | OK | |||
| r-release-macos-x86_64 | 0.1.0 | 75.00 | OK | |||
| r-release-windows-x86_64 | 0.1.0 | 36.00 | 0.00 | 36.00 | FAIL | |
| r-oldrel-macos-arm64 | 0.1.0 | 54.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.0 | 67.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 0.1.0 | 39.00 | 181.00 | 220.00 | OK |
Version: 0.1.0
Check: examples
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
2 TGTGCCAGCAGCCAAGTCATCCAAGGTGAGCAGTTCTTC 55 23
3 48 24
4 TGCCCCGACACGGGCAGGAGAGCACTTACTTTT 24 13
5 13 9
6 26 10
raw_clonotype_id raw_consensus_id exact_subclonotype_id
1 NA
2 NA
3 NA
4 NA
5 NA
6 NA
>
>
>
>
> cleanEx()
> nameEx("dot-ReadAIRR")
> ### * dot-ReadAIRR
>
> flush(stderr()); flush(stdout())
>
> ### Name: .ReadAIRR
> ### Title: Read AIRR file.
> ### Aliases: .ReadAIRR
>
> ### ** Examples
>
> airr_file = system.file('extdata', 'TRUST4_airr.tsv.gz', package = 'TrustVDJ')
> airr = .ReadAIRR(airr_file = airr_file, verbose = FALSE)
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Version: 0.1.0
Check: examples
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
6 NA NA
junction junction_aa
1 TGTGCCAGCAGTGAAAGACATGCCACAGATACGCAGTATTTT CASSERHATDTQYF
2 TGCGCCAGCAGTGTTCGTCCTAGCGGGGACAGCACAGATACGCAGTATTTT CASSVRPSGDSTDTQYF
3 TGTGCCAGCACTCTAGCGGCTAGCACAGATACGCAGTATTTT CASTLAASTDTQYF
4 TGTGCCAGCAGCTTGAGGGGGGCGGATACGCAGTATTTT CASSLRGADTQYF
5 TGCAGTGCCGCAACCCTAGTCCTAGCGGGGGGCCAGGGCACAGATACGCAGTATTTT CSAATLVLAGGQGTDTQYF
6 TGCGCCAGCAGCCAAGATAGGGTGGGGCTAGCGGGGGATACGCAGTATTTT CASSQDRVGLAGDTQYF
v_cigar d_cigar j_cigar v_identity j_identity cell_id
1 56M107S 64S47M52S 100 100 CTCGTCATCGTTGCCT
2 281M120S 289S9M103S 300S49M52S 100 100 AGTGTCAGTCGAAAGC
3 280M112S 282S7M103S 291S49M52S 100 100 ACTGAACAGCCACCTG
4 60M105S 63S6M96S 70S43M52S 100 100 CAGTCCTGTTATCACG
5 24M129S 37S11M105S 53S48M52S 100 100 TTTGGTTCATCCGGGT
6 103M114S 109S14M94S 122S43M52S 100 100 GTATCTTGTCAACTGT
complete_vdj consensus_count
1 F 1
2 T 4
3 T 3
4 F 4
5 F 1
6 F 9
>
> # only barcode_report
>
> # only report
> data = ReadTrust(report_file = report_file)
--! 2022-08-14 18:47:28 Ignored AIRR report file due to no exist: NA !--
--! 2022-08-14 18:47:28 Ignored TRUST4 barcode_report file due to no exist: NA !--
--> 2022-08-14 18:47:28 Reading: D:/RCompile/CRANpkg/lib/4.2/TrustVDJ/extdata/TRUST4_report.tsv.gz <--
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64