Scrubbing and Other Data Cleaning Routines for fMRI

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Documentation for package ‘fMRIscrub’ version 0.11.2

• DESCRIPTION file.

Help Pages

artifact_images	Artifact images
bandstop_filter	Bandstop filter
carpetplot	Carpetplot
carpetplot_stack	Stacked carpetplot
CompCor	Anatomical CompCor
CompCor_HCP	Anatomical CompCor for HCP NIFTI and CIFTI data
Dat1	First Example Time Series from the ABIDE
Dat2	Second Example Time Series from the ABIDE
dct2Hz	DCT and frequency conversion
dct_bases	Generate cosine bases for the DCT
dct_convert	DCT and frequency conversion
detrend	Detrending with DCT or FFT
DVARS	DVARS
erode_vol	Erode volumetric mask
FD	Framewise Displacement
fMRIscrub	fMRIscrub: fMRI scrubbing and other data cleaning routines
fsl_bptf	'bptf' function from FSL
high_kurtosis	Which components have high kurtosis?
Hz2dct	DCT and frequency conversion
leverage	Leverage
nuisance_regression	Nuisance regression
pct_sig	Convert data values to percent signal.
plot.scrub_DVARS	Plot a '"scrub_DVARS"' object
plot.scrub_FD	Plot a '"scrub_FD"' object
plot.scrub_projection	Plot a '"scrub_projection"' object
print.scrub_DVARS	Summarize a '"scrub_DVARS"' object
print.scrub_FD	Summarize a '"scrub_FD"' object
print.scrub_projection	Summarize a '"scrub_projection"' object
print.summary.scrub_DVARS	Summarize a '"scrub_DVARS"' object
print.summary.scrub_FD	Summarize a '"scrub_FD"' object
print.summary.scrub_projection	Summarize a '"scrub_projection"' object
pscrub	Projection scrubbing
rob_stabilize	Stabilize the center and scale of a timeseries robustly
scale_med	Robust scaling
scrub	Data-driven scrubbing
scrub_xifti	Scrub fMRI data in CIFTI format
summary.scrub_DVARS	Summarize a '"scrub_DVARS"' object
summary.scrub_FD	Summarize a '"scrub_FD"' object
summary.scrub_projection	Summarize a '"scrub_projection"' object
unmask_vol	Undo a volumetric mask