* using log directory 'd:/Rcompile/CRANpkg/local/3.6/cdcfluview.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'cdcfluview/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cdcfluview' version '0.9.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'cdcfluview' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ERROR Running examples in 'cdcfluview-Ex.R' failed The error most likely occurred in: > ### Name: age_group_distribution > ### Title: Age Group Distribution of Influenza Positive Tests Reported by > ### Public Health Laboratories > ### Aliases: age_group_distribution > > ### ** Examples > > agd <- age_group_distribution(years=2015) Error: Can't use NA as column index in a tibble for assignment. Backtrace: x 1. \-cdcfluview::age_group_distribution(years = 2015) 2. +-dplyr::left_join(vir_df, sea_df, "seasonid") 3. \-dplyr:::left_join.data.frame(vir_df, sea_df, "seasonid") 4. \-dplyr:::join_mutate(...) 5. +-base::`[<-`(...) 6. \-tibble:::`[<-.tbl_df`(...) 7. \-tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value)) 8. \-tibble:::vectbl_as_new_col_index(j, x, value, j_arg, value_arg) Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [7s] ERROR Running 'test-all.R' [6s] Running the tests in 'tests/test-all.R' failed. Complete output: > library(testthat) > test_check("cdcfluview") Loading required package: cdcfluview == Skipped tests =============================================================== * On CRAN (1) == Failed tests ================================================================ -- Error (test-cdcfluview.R:5:3): New API works -------------------------------- Error: Can't use NA as column index in a tibble for assignment. Backtrace: x 1. +-testthat::expect_that(age_group_distribution(years = 2017), is_a("data.frame")) test-cdcfluview.R:5:2 2. | \-testthat:::condition(object) 3. | \-testthat::expect_is(x, class) 4. | \-testthat::quasi_label(enquo(object), label, arg = "object") 5. | \-rlang::eval_bare(expr, quo_get_env(quo)) 6. \-cdcfluview::age_group_distribution(years = 2017) 7. +-dplyr::left_join(vir_df, sea_df, "seasonid") 8. \-dplyr:::left_join.data.frame(vir_df, sea_df, "seasonid") 9. \-dplyr:::join_mutate(...) 10. +-base::`[<-`(...) 11. \-tibble:::`[<-.tbl_df`(...) 12. \-tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value)) 13. \-tibble:::vectbl_as_new_col_index(j, x, value, j_arg, value_arg) [ FAIL 1 | WARN 0 | SKIP 1 | PASS 1 ] Error: Test failures Execution halted * checking PDF version of manual ... OK * DONE Status: 2 ERRORs