* using log directory 'd:/Rcompile/CRANpkg/local/3.5/stagedtrees.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'stagedtrees/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'stagedtrees' version '1.0.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'stagedtrees' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ERROR Running examples in 'stagedtrees-Ex.R' failed The error most likely occurred in: > ### Name: plot.sevt > ### Title: Plot method for staged event trees > ### Aliases: plot.sevt > > ### ** Examples > > > data("PhDArticles") > mod <- bj.sevt(full(PhDArticles)) > > ### simple plotting > plot(mod) > > ### removing lables from nodes and edges and fill nodes > plot(mod, cex.label.nodes = 0, cex.label.edges = 0, pch = 16) > > ### reduce nodes size > plot(mod, cex.nodes = 1) > > ### change line width and nodes style > plot(mod, lwd = 3, pch = 5) > > ### changing palette > plot(mod, col = function(s) heat.colors(length(s))) > > ### or changing global palette > palette(hcl.colors(10, "Harmonic")) Error in hcl.colors(10, "Harmonic") : could not find function "hcl.colors" Calls: palette Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [10s] ERROR Running 'testthat.R' [10s] Running the tests in 'tests/testthat.R' failed. Complete output: > library("testthat") > library("stagedtrees") > > test_check("stagedtrees") -- 1. Error: barplot_stages should accept col = function() (@test_plot.R#47) -- 'hcl.colors' is not an exported object from 'namespace:grDevices' Backtrace: 1. testthat::expect_silent(...) 9. stagedtrees::barplot_stages(...) 10. base::lapply(...) 11. stagedtrees:::FUN(X[[i]], ...) 12. stagedtrees:::col(unique(stages)) 13. grDevices::hcl.colors 14. base::getExportedValue(pkg, name) == testthat results =========================================================== [ OK: 561 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] 1. Error: barplot_stages should accept col = function() (@test_plot.R#47) Error: testthat unit tests failed Execution halted * checking PDF version of manual ... OK * DONE Status: 2 ERRORs