* using log directory 'd:/Rcompile/CRANpkg/local/3.5/sigminer.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'sigminer/DESCRIPTION' ... OK * this is package 'sigminer' version '1.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'sigminer' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [21s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ERROR Running examples in 'sigminer-Ex.R' failed The error most likely occurred in: > ### Name: add_labels > ### Title: Add Text Labels to a ggplot > ### Aliases: add_labels > > ### ** Examples > > # Load mutational signature > load(system.file("extdata", "toy_mutational_signature.RData", + package = "sigminer", mustWork = TRUE + )) > # Show signature profile > p <- show_sig_profile(sig2, mode = "SBS") > > # Method 1 > p1 <- add_labels(p, + x = 0.75, y = 0.3, y_end = 0.9, n_label = 3, + labels = paste0("text", 1:3) + ) > p1 > > # Method 2 > p2 <- add_labels(p, + x = c(0.15, 0.6, 0.75), y = c(0.3, 0.6, 0.9), + labels = paste0("text", 1:3) + ) > p2 > > # Method 3 > sim <- get_sig_similarity(sig2) Error in system.file("extdata", "legacy_signatures.RDs", package = "maftools", : no file found Calls: get_sig_similarity -> readRDS -> system.file Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [1s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR