* using log directory 'd:/Rcompile/CRANpkg/local/3.5/mlt.docreg.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'mlt.docreg/DESCRIPTION' ... OK * this is package 'mlt.docreg' version '1.0-5' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'mlt.docreg' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... NONE * checking for unstated dependencies in 'tests' ... OK * checking tests ... [37s] OK Running 'AFT-Ex.R' [6s] Comparing 'AFT-Ex.Rout' to 'AFT-Ex.Rout.save' ...108c108 < 1.0000000 -0.7769311 0.7114706 0.9290078 --- > 1.0000000 -0.7578848 0.8465755 1.2262994 113c113 < 0.7769331 -0.7114734 -0.9290107 --- > 0.7578849 -0.8465759 -1.2262999 116c116 < 0.6417629 0.8665577 --- > 0.8332798 1.2134218 119c119 < 0.7114734 0.9290107 0.7769331 --- > 0.8465759 1.2262999 0.7578849 125c125 < 0.2001601 0.2061227 --- > 0.1916379 0.1892540 129c129 < 0.2145765 0.2246662 --- > 0.2088555 0.2118118 133c133 < 0.2001602 0.2061227 --- > 0.1916379 0.1892540 145c145 < 1.0000000 0.2539173 0.8049793 1.2275557 --- > 1.0000000 0.2164302 0.9043383 1.1406712 149c149 < -0.2539170 -0.8049797 -1.2275561 --- > -0.2164302 -0.9043383 -1.1406712 155c155 < 0.1480444 0.1489387 --- > 0.1485446 0.1473571 159c159 < 0.2001602 0.2061227 --- > 0.1916379 0.1892540 177c177 < 1.0000000 -0.4439604 0.8668120 0.9058709 --- > 1.0000000 -0.2612821 0.7258507 0.8381451 180c180 < 0.4439603 -0.8668110 -0.9058720 --- > 0.2612821 -0.7258509 -0.8381449 186c186 < 0.1658976 0.1738981 --- > 0.1651103 0.1723239 190c190 < 0.2001602 0.2061227 --- > 0.1916379 0.1892540 292c292 < 3.2532110 -0.6681291 -2.2493977 -3.4629504 --- > 3.1004541 -0.5711125 -2.3823821 -3.5225652 295c295 < -0.2053753 -0.6914392 -1.0644715 --- > -0.1842029 -0.7683978 -1.1361449 299c299 < 0.2053755 0.6914353 1.0644582 --- > 0.1842060 0.7683967 1.1361412 304c304 < -0.6528209 -1.0510234 --- > -0.7957308 -1.1705361 309c309 < -0.6914353 -1.0644582 --- > -0.7683967 -1.1361412 314c314 < 0.2330995 0.2783563 --- > 0.2377624 0.2816145 317c317 < 0.2546303 0.3007458 --- > 0.2684431 0.3114552 320c320 < 0.2330989 0.2783546 --- > 0.2377627 0.2816141 324c324 < 'log Lik.' -234.0108 (df=4) --- > 'log Lik.' -228.7986 (df=4) 326c326 < 'log Lik.' -234.0108 (df=4) --- > 'log Lik.' -228.7986 (df=4) 337c337 < 2.0678543 0.5413123 -1.4971429 -2.4559495 --- > 2.1902538 0.5830063 -1.5662463 -2.3886791 340c340 < 0.2617749 -0.7240079 -1.1876801 --- > 0.2661821 -0.7150981 -1.0905947 344c344 < -0.2617748 0.7240077 1.1876800 --- > -0.2661692 0.7150879 1.0905913 348c348 < 'log Lik.' -258.2656 (df=4) --- > 'log Lik.' -209.1118 (df=4) 350c350 < 'log Lik.' -258.2656 (df=4) --- > 'log Lik.' -209.1118 (df=4) 361c361 < 2.2737739 -0.4740909 -1.3075677 -2.1575866 --- > 2.4686323 -0.3284947 -1.4644029 -2.4999036 364c364 < -0.2085040 -0.5750649 -0.9489011 --- > -0.1330675 -0.5932041 -1.0126675 368c368 < 0.2085090 0.5750594 0.9488965 --- > 0.1330675 0.5932042 1.0126677 372c372 < 'log Lik.' -303.5903 (df=4) --- > 'log Lik.' -290.4319 (df=4) 374c374 < 'log Lik.' -303.5903 (df=4) --- > 'log Lik.' -290.4319 (df=4) Running 'GBSG2.R' [4s] Running 'faithful.R' [9s] Comparing 'faithful.Rout' to 'faithful.Rout.save' ... OK Running 'timedep_covar.R' [9s] Comparing 'timedep_covar.Rout' to 'timedep_covar.Rout.save' ... OK Running 'truncreg-Ex.R' [4s] Comparing 'truncreg-Ex.Rout' to 'truncreg-Ex.Rout.save' ... OK Running 'udist-Ex.R' [4s] Comparing 'udist-Ex.Rout' to 'udist-Ex.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [416s] OK * checking PDF version of manual ... OK * DONE Status: OK