* using log directory 'd:/Rcompile/CRANpkg/local/3.5/mlt.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'mlt/DESCRIPTION' ... OK * this is package 'mlt' version '1.1-2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'mlt' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking examples ... [4s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [48s] OK Running '2sample.R' [4s] Comparing '2sample.Rout' to '2sample.Rout.save' ... OK Running 'Cox-Ex.R' [6s] Comparing 'Cox-Ex.Rout' to 'Cox-Ex.Rout.save' ...78c78 < -0.675861 -0.359837 -0.028963 0.103427 0.103427 0.844498 0.699278 1.010532 --- > -0.80017 -0.50675 -0.30211 0.25437 0.25437 1.20222 0.66696 1.19417 81c81 < 0.63497 0.94467 --- > 0.59631 1.15907 87c87 < 0.19098 0.38298 1.00273 1.12004 1.12004 1.66543 0.72824 0.87543 --- > 0.43810 0.64728 1.05050 1.05050 1.05050 1.79448 0.48891 0.66483 94c94 < -0.55853 -0.32513 0.84709 0.84709 0.84709 1.37019 0.62698 0.94831 --- > -0.48006 -0.18524 0.26866 0.57464 0.57464 1.27249 0.80125 0.98864 Running 'bugfixes.R' [5s] Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ... OK Running 'dpq-Ex.R' [4s] Comparing 'dpq-Ex.Rout' to 'dpq-Ex.Rout.save' ...18c18 < -0.6057279 1.0553864 0.0278408 0.0062606 --- > -1.154231 1.114021 0.023350 0.059998 49,50c49,50 < 0.25 -0.10353 -0.13018 -0.15661 < 0.5 0.53569 0.50932 0.48293 --- > 0.25 0.30144 0.28064 0.25996 > 0.5 0.90741 0.88646 0.86550 56,57c56,57 < 0.25 -0.10934 -0.13617 -0.16248 < 0.5 0.52976 0.50339 0.47700 --- > 0.25 0.24776 0.22663 0.20582 > 0.5 0.85356 0.83260 0.81165 61,67c61,67 < [1] (-1.29977, -1.22534] ( 1.15632, 1.23075] (-0.70435, -0.62992] < [4] ( 1.23075, 1.30518] ( 0.70976, 0.78419] ( 0.63534, 0.70976] < [7] ( 2.19830, Inf] ( 1.45403, 1.52846] ( 0.03992, 0.11435] < [10] ( 1.30518, 1.37961] (-1.22534, -1.15091] ( 0.11435, 0.18877] < [13] ( 0.70976, 0.78419] ( 0.18877, 0.26320] ( 0.63534, 0.70976] < [16] ( 0.85862, 0.93304] (-1.37419, -1.29977] ( 0.18877, 0.26320] < [19] ( 0.03992, 0.11435] ( 1.52846, 1.60289] --- > [1] (-1.00206, -0.92763] ( 0.93304, 1.00747] (-0.85320, -0.77878] > [4] ( 1.52846, 1.60289] ( 0.11435, 0.18877] ( 1.00747, 1.08190] > [7] ( 2.19830, Inf] ( 1.52846, 1.60289] (-0.40664, -0.33221] > [10] ( 0.78419, 0.85862] (-0.62992, -0.55550] (-0.33221, -0.25779] > [13] ( 0.63534, 0.70976] ( 0.33763, 0.41206] ( 1.00747, 1.08190] > [16] ( 1.00747, 1.08190] ( -Inf, -1.44862] ( 0.03992, 0.11435] > [19] (-0.18336, -0.10893] ( 1.45403, 1.52846] 81,82c81,82 < 1 0.60468 0.2545 -1.44089 0.11464 -0.34764 -1.25832 -0.59959 -0.83767 < 2 1.71768 1.3675 -0.32789 1.22765 0.76537 -0.14532 0.51341 0.27533 --- > 1 -0.15342 -0.43008 -0.47194 -0.044215 -0.75133 -0.088808 -0.24807 -0.28993 > 2 0.77962 0.50296 0.46109 0.888822 0.18170 0.844228 0.68497 0.64310 86,87c86,87 < 1 -0.96365 0.36769 -1.1035014 0.22783 -0.57075 -1.48143 -0.82271 -0.16398 < 2 0.14936 1.48069 0.0095018 1.34084 0.54225 -0.36843 0.29030 0.94903 --- > 1 -0.72312 -0.64759 -0.024196 -0.69218 -0.42098 -0.34545 -0.15252 -0.23351 > 2 0.20991 0.28545 0.908841 0.24085 0.51205 0.58759 0.78052 0.69952 91,92c91,92 < 1 -0.28995 -1.31274 -0.42981 0.45312 < 2 0.82305 -0.19974 0.68320 1.56613 --- > 1 -0.62757 -0.55203 -0.59390 -0.40097 > 2 0.30547 0.38100 0.33914 0.53207 96,100c96,100 < [1] 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 2 2 2 2 2 3 3 3 3 3 3 1 1 1 1 1 2 2 2 3 1 < [38] 1 1 2 2 2 2 3 3 1 2 2 2 3 3 3 3 3 1 1 2 2 2 2 3 3 3 1 1 2 2 2 2 3 3 3 1 2 < [75] 2 2 2 3 3 3 3 1 1 1 1 1 1 2 2 2 1 2 2 2 2 3 3 3 3 1 1 1 1 1 2 2 2 2 1 1 2 < [112] 2 2 2 2 3 3 2 2 2 3 3 3 3 3 3 1 1 2 2 2 2 3 3 3 1 1 1 1 2 2 2 2 3 1 1 1 2 < [149] 2 2 2 3 3 2 2 2 2 3 3 3 3 3 1 1 1 2 2 2 2 3 3 1 1 1 1 1 1 2 2 2 --- > [1] 1 1 1 1 2 2 2 3 3 1 1 1 2 2 2 3 3 3 1 1 1 2 2 2 3 3 3 1 1 1 1 2 2 2 2 3 1 > [38] 1 2 2 2 3 3 3 3 1 1 1 1 2 2 2 2 3 1 1 1 1 2 2 2 3 3 1 1 1 2 2 2 2 3 3 1 1 > [75] 2 2 2 3 3 3 3 1 1 2 2 2 2 3 3 3 1 1 1 1 2 2 2 2 3 1 1 2 2 2 3 3 3 3 1 1 1 > [112] 2 2 2 3 3 3 1 1 1 2 2 2 2 3 3 1 1 1 1 2 2 2 3 3 1 1 1 1 2 2 2 3 3 1 1 2 2 > [149] 2 2 3 3 3 1 1 2 2 2 2 3 3 3 1 1 2 2 2 2 3 3 3 1 1 1 2 2 2 2 3 3 105c105 < [1] 1 1 2 1 2 1 3 3 1 1 3 1 2 3 1 2 2 2 3 1 --- > [1] 1 1 1 1 3 1 3 3 1 1 3 2 1 2 1 3 3 2 3 2 109c109 < [1] 1 2 3 3 2 2 2 3 3 1 2 1 1 3 2 1 3 2 1 1 --- > [1] 2 2 3 3 3 1 2 3 3 1 1 1 1 3 2 1 3 2 2 1 113c113 < [1] 1 1 3 2 1 3 3 3 3 2 2 2 1 3 2 2 2 3 2 1 --- > [1] 2 1 3 2 1 3 3 2 3 3 1 3 1 2 2 2 2 3 2 1 119,121c119,121 < 1 0.727304 0.600445 0.074808 0.54564 0.36406 0.10414 0.27439 0.20111 0.16761 < 2 0.229769 0.313821 0.296690 0.34457 0.41392 0.33809 0.42178 0.40736 0.39175 < 3 0.042927 0.085734 0.628502 0.10979 0.22203 0.55777 0.30383 0.39153 0.44064 --- > 1 0.43903 0.33357 0.31848 0.48237 0.22623 0.46462 0.40204 0.38593 0.23480 > 2 0.34316 0.35893 0.35915 0.33058 0.34587 0.33611 0.35128 0.35399 0.34833 > 3 0.21781 0.30750 0.32237 0.18705 0.42791 0.19927 0.24668 0.26008 0.41687 123,125c123,125 < 1 0.643447 0.13490 0.590112 0.28408 0.069245 0.20534 0.43488 0.38593 0.094636 < 2 0.287209 0.36889 0.319901 0.42209 0.287031 0.40887 0.39382 0.40883 0.326208 < 3 0.069345 0.49621 0.089987 0.29382 0.643724 0.38579 0.17130 0.20524 0.579156 --- > 1 0.25863 0.49035 0.24441 0.33688 0.36488 0.43939 0.40768 0.26514 0.29046 > 2 0.35372 0.32793 0.35075 0.35881 0.35672 0.34307 0.35021 0.35485 0.35794 > 3 0.38765 0.18172 0.40483 0.30431 0.27840 0.21754 0.24211 0.38001 0.35160 127,129c127,129 < 1 0.33367 0.67477 < 2 0.41909 0.26657 < 3 0.24724 0.05866 --- > 1 0.27629 0.34422 > 2 0.35646 0.35844 > 3 0.36725 0.29734 135,137c135,137 < 1 0.763245 0.758942 0.75460 < 2 0.203114 0.206366 0.20963 < 3 0.033641 0.034692 0.03577 --- > 1 0.50124 0.50015 0.49906 > 2 0.32416 0.32455 0.32493 > 3 0.17460 0.17530 0.17601 142,144c142,144 < 1 0.727304 0.722673 0.718005 < 2 0.229769 0.233118 0.236474 < 3 0.042927 0.044209 0.045521 --- > 1 0.48563 0.48454 0.48346 > 2 0.32951 0.32987 0.33023 > 3 0.18486 0.18559 0.18632 Running 'glm-Ex.R' [5s] Comparing 'glm-Ex.Rout' to 'glm-Ex.Rout.save' ... OK Running 'lm-Ex.R' [5s] Comparing 'lm-Ex.Rout' to 'lm-Ex.Rout.save' ... OK Running 'polr-Ex.R' [4s] Comparing 'polr-Ex.Rout' to 'polr-Ex.Rout.save' ... OK Running 'predict-Ex.R' [6s] Comparing 'predict-Ex.Rout' to 'predict-Ex.Rout.save' ... OK Running 'subset.R' [5s] Comparing 'subset.Rout' to 'subset.Rout.save' ... OK Running 'surv-Ex.R' [3s] Comparing 'surv-Ex.Rout' to 'surv-Ex.Rout.save' ... OK * checking PDF version of manual ... OK * DONE Status: OK