* using log directory 'd:/Rcompile/CRANpkg/local/3.5/glmnetcr.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'glmnetcr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'glmnetcr' version '1.0.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'glmnetcr' can be installed ... WARNING
Found the following significant warnings:
  Note: possible error in 'glmnet(glmnet.data$x, ': unused argument (trace.it = trace.it) 
See 'd:/Rcompile/CRANpkg/local/3.5/glmnetcr.Rcheck/00install.out' for details.
Information on the location(s) of code generating the 'Note's can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to 'yes'.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s] NOTE
glmnetcr: possible error in glmnet(glmnet.data$x, glmnet.data$y, family
  = "binomial", weights = glmnet.data$weights, offset = offset, alpha =
  alpha, nlambda = nlambda, lambda.min.ratio = lambda.min.ratio, lambda
  = lambda, standardize = standardize, thresh = thresh, dfmax = dfmax,
  pmax = pmax, exclude = exclude, penalty.factor = c(penalty.factor,
  rep(0, k - 1)), maxit = maxit, type.gaussian = ifelse(nvars < 500,
  "covariance", "naive"), trace.it = trace.it, type.logistic =
  type.logistic): unused argument (trace.it = trace.it)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'glmnetcr-Ex.R' failed
The error most likely occurred in:

> ### Name: coef.glmnetcr
> ### Title: Extract All Model Coefficients
> ### Aliases: coef.glmnetcr
> ### Keywords: methods
> 
> ### ** Examples
> 
> data(diabetes)
> x <- diabetes[, 2:dim(diabetes)[2]]
> y <- diabetes$y
> glmnet.fit <- glmnetcr(x, y)
Error in glmnet(glmnet.data$x, glmnet.data$y, family = "binomial", weights = glmnet.data$weights,  : 
  unused argument (trace.it = trace.it)
Calls: glmnetcr
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [3s] WARNING
Error in re-building vignettes:
  ...
Loading required package: glmnet
Loading required package: Matrix
Loading required package: foreach
Loaded glmnet 2.0-18


Error: processing vignette 'glmnetcr.Rnw' failed with diagnostics:
 chunk 2 
Error in glmnet(glmnet.data$x, glmnet.data$y, family = "binomial", weights = glmnet.data$weights,  : 
  unused argument (trace.it = trace.it)
Execution halted

* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 2 WARNINGs, 1 NOTE