* using log directory 'd:/Rcompile/CRANpkg/local/3.5/beadplexr.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'beadplexr/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'beadplexr' version '0.3.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'beadplexr' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [19s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [141s] ERROR Running 'testthat.R' [140s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(beadplexr) > > test_check("beadplexr") -- 1. Error: ident_bead_pop() works (@test_identify_assay_analyte.R#39) ------- Assigned data `c("A", "B")` must be compatible with existing data. x Existing data has 5126 rows. x Assigned data has 2 rows. i Only vectors of size 1 are recycled. Backtrace: 1. base::`$<-`(`*tmp*`, BeadID, value = c("A", "B")) 2. tibble:::`$<-.tbl_df`(`*tmp*`, BeadID, value = c("A", "B")) 3. tibble:::tbl_subassign(...) 4. tibble:::vectbl_recycle_rhs(...) 5. base::tryCatch(...) 6. base:::tryCatchList(expr, classes, parentenv, handlers) 7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. value[[3L]](cond) == testthat results =========================================================== [ OK: 398 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] 1. Error: ident_bead_pop() works (@test_identify_assay_analyte.R#39) Error: testthat unit tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [129s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR