* using log directory 'd:/Rcompile/CRANpkg/local/3.5/SanzCircos.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'SanzCircos/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SanzCircos' version '0.1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SanzCircos' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in 'SanzCircos-Ex.R' failed
The error most likely occurred in:

> ### Name: make_circos_links
> ### Title: make_circos_links
> ### Aliases: make_circos_links
> 
> ### ** Examples
> 
> 
> links_df <- data.frame(chrom = c(rep("chr1", 5), rep("chr2", 5)),
+ band = c(rep("band1", 3), rep("band2", 2), "band1", rep("band2", 4)),
+ link = c(1, 2, 3, 1, 2, 1, 1, 3, 4, 5),
+ start = c(1, 3, 5, 10, 35, 1, 5, 8, 13, 15),
+ end = c(3, 5, 10, 35, 39, 5, 8, 13, 15, 21))
> 
> links <- make_circos_links(links_df, "chrom", "band", "link", "start", "end", status = TRUE)
Warning: `as.tibble()` is deprecated as of tibble 2.0.0.
Please use `as_tibble()` instead.
The signature and semantics have changed, see `?as_tibble`.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.
Error: Assigned data `as.character(df[[chromosome_grouping]][i])` must be compatible with existing data.
i Error occurred for column `V2`.
x Lossy cast from `value` <character> to `x` <logical>.
* Locations: 1.
Backtrace:
     x
  1. \-SanzCircos::make_circos_links(...)
  2.   +-dplyr::bind_rows(...)
  3.   | +-dplyr:::flatten_bindable(dots_values(...))
  4.   | \-rlang::dots_values(...)
  5.   \-pbapply::pblapply(...)
  6.     \-base::lapply(X, FUN, ...)
  7.       \-SanzCircos:::FUN(X[[i]], ...)
  8.         +-base::`[<-`(`*tmp*`, 1, 2, value = "chr1")
  9.         \-tibble:::`[<-.tbl_df`(`*tmp*`, 1, 2, value = "chr1")
 10.           \-tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
 11.             \-tibble:::tbl_subassign_row(xj, i, value, value_arg)
 12.               \-base::tryCatch(...)
 13.                 \-base:::tryCatchList(expr, classes, parentenv, handlers)
 14.                   \-base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
 15.  
Execution halted
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR