* using log directory 'd:/Rcompile/CRANpkg/local/3.5/MachineShop.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'MachineShop/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MachineShop' version '1.6.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MachineShop' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [22s] NOTE DomainError: no visible global function definition for 'errorCondition' fget0: no visible global function definition for 'str2lang' Undefined global functions or variables: errorCondition str2lang * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ERROR Running examples in 'MachineShop-Ex.R' failed The error most likely occurred in: > ### Name: MLModel > ### Title: MLModel Class Constructor > ### Aliases: MLModel > > ### ** Examples > > ## Logistic regression model > LogisticModel <- MLModel( + name = "LogisticModel", + response_types = "binary", + fit = function(formula, data, weights, ...) { + glm(formula, data = data, weights = weights, family = binomial, ...) + }, + predict = function(object, newdata, ...) { + predict(object, newdata = newdata, type = "response") + }, + varimp = function(object, ...) { + pchisq(coef(object)^2 / diag(vcov(object)), 1) + } + ) > > library(MASS) > res <- resample(type ~ ., data = Pima.tr, model = LogisticModel) Error in str2lang(x) : could not find function "str2lang" Calls: resample ... resample.ModelFrame -> .resample -> getMLObject -> fget -> fget0 Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [7s] ERROR Running 'testthat.R' [6s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(MachineShop) > > test_check("MachineShop") -- 1. Error: (unknown) (@test-ML_StackedModel.R#3) ---------------------------- could not find function "str2lang" Backtrace: 1. MachineShop::StackedModel(GBMModel, GLMNetModel(lambda = 0.01)) 2. MachineShop:::getMLObject(control, "MLControl") 3. MachineShop:::fget(x) 4. MachineShop:::fget0(x) == testthat results =========================================================== [ OK: 0 | SKIPPED: 67 | WARNINGS: 0 | FAILED: 1 ] 1. Error: (unknown) (@test-ML_StackedModel.R#3) Error: testthat unit tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [7s] WARNING Error in re-building vignettes: ... Warning: Removed 70 rows containing missing values (geom_point). Quitting from lines 185-190 (Introduction.Rmd) Error: processing vignette 'Introduction.Rmd' failed with diagnostics: could not find function "str2lang" Execution halted * checking PDF version of manual ... OK * DONE Status: 2 ERRORs, 1 WARNING, 1 NOTE