* using log directory 'd:/Rcompile/CRANpkg/local/3.5/EpiModel.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'EpiModel/DESCRIPTION' ... OK * this is package 'EpiModel' version '1.7.5' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'EpiModel' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... WARNING Loading required package: deSolve Loading required package: networkDynamic Loading required package: network Loading required package: utils network: Classes for Relational Data Version 1.16.0 created on 2019-11-30. copyright (c) 2005, Carter T. Butts, University of California-Irvine Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Martina Morris, University of Washington Skye Bender-deMoll, University of Washington For citation information, type citation("network"). Type help("network-package") to get started. networkDynamic: version 0.10.1, created on 2020-01-16 Copyright (c) 2020, Carter T. Butts, University of California -- Irvine Ayn Leslie-Cook, University of Washington Pavel N. Krivitsky, University of Wollongong Skye Bender-deMoll, University of Washington with contributions from Zack Almquist, University of California -- Irvine David R. Hunter, Penn State University Li Wang Kirk Li, University of Washington Steven M. Goodreau, University of Washington Jeffrey Horner Martina Morris, University of Washington Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("networkDynamic"). Loading required package: tergm Loading required package: ergm ergm: version 3.10.4, created on 2019-06-10 Copyright (c) 2019, Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Carter T. Butts, University of California -- Irvine Steven M. Goodreau, University of Washington Pavel N. Krivitsky, University of Wollongong Martina Morris, University of Washington with contributions from Li Wang Kirk Li, University of Washington Skye Bender-deMoll, University of Washington Chad Klumb Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("ergm"). NOTE: Versions before 3.6.1 had a bug in the implementation of the bd() constriant which distorted the sampled distribution somewhat. In addition, Sampson's Monks datasets had mislabeled vertices. See the NEWS and the documentation for more details. NOTE: Some common term arguments pertaining to vertex attribute and level selection have changed in 3.10.0. See terms help for more details. Use 'options(ergm.term=list(version="3.9.4"))' to use old behavior. Error: package or namespace load failed for 'tergm' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace 'nlme' 3.1-137 is being loaded, but >= 3.1.139 is required Error: package 'tergm' could not be loaded Execution halted It looks like this package has a loading problem when not on .libPaths: see the messages for details. ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... WARNING Loading required package: deSolve Loading required package: networkDynamic Loading required package: network Loading required package: utils network: Classes for Relational Data Version 1.16.0 created on 2019-11-30. copyright (c) 2005, Carter T. Butts, University of California-Irvine Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Martina Morris, University of Washington Skye Bender-deMoll, University of Washington For citation information, type citation("network"). Type help("network-package") to get started. networkDynamic: version 0.10.1, created on 2020-01-16 Copyright (c) 2020, Carter T. Butts, University of California -- Irvine Ayn Leslie-Cook, University of Washington Pavel N. Krivitsky, University of Wollongong Skye Bender-deMoll, University of Washington with contributions from Zack Almquist, University of California -- Irvine David R. Hunter, Penn State University Li Wang Kirk Li, University of Washington Steven M. Goodreau, University of Washington Jeffrey Horner Martina Morris, University of Washington Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("networkDynamic"). Loading required package: tergm Loading required package: ergm ergm: version 3.10.4, created on 2019-06-10 Copyright (c) 2019, Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Carter T. Butts, University of California -- Irvine Steven M. Goodreau, University of Washington Pavel N. Krivitsky, University of Wollongong Martina Morris, University of Washington with contributions from Li Wang Kirk Li, University of Washington Skye Bender-deMoll, University of Washington Chad Klumb Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("ergm"). NOTE: Versions before 3.6.1 had a bug in the implementation of the bd() constriant which distorted the sampled distribution somewhat. In addition, Sampson's Monks datasets had mislabeled vertices. See the NEWS and the documentation for more details. NOTE: Some common term arguments pertaining to vertex attribute and level selection have changed in 3.10.0. See terms help for more details. Use 'options(ergm.term=list(version="3.9.4"))' to use old behavior. Error: package or namespace load failed for 'tergm' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace 'nlme' 3.1-137 is being loaded, but >= 3.1.139 is required Error: package 'tergm' could not be loaded Execution halted It looks like this package has a loading problem when not on .libPaths: see the messages for details. ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [33s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... ERROR Running examples in 'EpiModel-Ex.R' failed The error occurred in: R version 3.5.3 (2019-03-11) -- "Great Truth" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > pkgname <- "EpiModel" > source(file.path(R.home("share"), "R", "examples-header.R")) > options(warn = 1) > options(pager = "console") > library('EpiModel') Loading required package: deSolve Loading required package: networkDynamic Loading required package: network network: Classes for Relational Data Version 1.16.0 created on 2019-11-30. copyright (c) 2005, Carter T. Butts, University of California-Irvine Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Martina Morris, University of Washington Skye Bender-deMoll, University of Washington For citation information, type citation("network"). Type help("network-package") to get started. networkDynamic: version 0.10.1, created on 2020-01-16 Copyright (c) 2020, Carter T. Butts, University of California -- Irvine Ayn Leslie-Cook, University of Washington Pavel N. Krivitsky, University of Wollongong Skye Bender-deMoll, University of Washington with contributions from Zack Almquist, University of California -- Irvine David R. Hunter, Penn State University Li Wang Kirk Li, University of Washington Steven M. Goodreau, University of Washington Jeffrey Horner Martina Morris, University of Washington Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("networkDynamic"). Loading required package: tergm Loading required package: ergm ergm: version 3.10.4, created on 2019-06-10 Copyright (c) 2019, Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Carter T. Butts, University of California -- Irvine Steven M. Goodreau, University of Washington Pavel N. Krivitsky, University of Wollongong Martina Morris, University of Washington with contributions from Li Wang Kirk Li, University of Washington Skye Bender-deMoll, University of Washington Chad Klumb Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("ergm"). NOTE: Versions before 3.6.1 had a bug in the implementation of the bd() constriant which distorted the sampled distribution somewhat. In addition, Sampson's Monks datasets had mislabeled vertices. See the NEWS and the documentation for more details. NOTE: Some common term arguments pertaining to vertex attribute and level selection have changed in 3.10.0. See terms help for more details. Use 'options(ergm.term=list(version="3.9.4"))' to use old behavior. Error: package or namespace load failed for 'tergm' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace 'nlme' 3.1-137 is being loaded, but >= 3.1.139 is required Error: package 'tergm' could not be loaded Execution halted ** running examples for arch 'x64' ... ERROR Running examples in 'EpiModel-Ex.R' failed The error occurred in: R version 3.5.3 (2019-03-11) -- "Great Truth" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > pkgname <- "EpiModel" > source(file.path(R.home("share"), "R", "examples-header.R")) > options(warn = 1) > options(pager = "console") > library('EpiModel') Loading required package: deSolve Loading required package: networkDynamic Loading required package: network network: Classes for Relational Data Version 1.16.0 created on 2019-11-30. copyright (c) 2005, Carter T. Butts, University of California-Irvine Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Martina Morris, University of Washington Skye Bender-deMoll, University of Washington For citation information, type citation("network"). Type help("network-package") to get started. networkDynamic: version 0.10.1, created on 2020-01-16 Copyright (c) 2020, Carter T. Butts, University of California -- Irvine Ayn Leslie-Cook, University of Washington Pavel N. Krivitsky, University of Wollongong Skye Bender-deMoll, University of Washington with contributions from Zack Almquist, University of California -- Irvine David R. Hunter, Penn State University Li Wang Kirk Li, University of Washington Steven M. Goodreau, University of Washington Jeffrey Horner Martina Morris, University of Washington Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("networkDynamic"). Loading required package: tergm Loading required package: ergm ergm: version 3.10.4, created on 2019-06-10 Copyright (c) 2019, Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Carter T. Butts, University of California -- Irvine Steven M. Goodreau, University of Washington Pavel N. Krivitsky, University of Wollongong Martina Morris, University of Washington with contributions from Li Wang Kirk Li, University of Washington Skye Bender-deMoll, University of Washington Chad Klumb Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("ergm"). NOTE: Versions before 3.6.1 had a bug in the implementation of the bd() constriant which distorted the sampled distribution somewhat. In addition, Sampson's Monks datasets had mislabeled vertices. See the NEWS and the documentation for more details. NOTE: Some common term arguments pertaining to vertex attribute and level selection have changed in 3.10.0. See terms help for more details. Use 'options(ergm.term=list(version="3.9.4"))' to use old behavior. Error: package or namespace load failed for 'tergm' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace 'nlme' 3.1-137 is being loaded, but >= 3.1.139 is required Error: package 'tergm' could not be loaded Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [5s] ERROR Running 'test-all.R' [3s] Running the tests in 'tests/test-all.R' failed. Complete output: > library(testthat) > test_check("EpiModel") Loading required package: EpiModel Loading required package: deSolve Loading required package: networkDynamic Loading required package: network network: Classes for Relational Data Version 1.16.0 created on 2019-11-30. copyright (c) 2005, Carter T. Butts, University of California-Irvine Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Martina Morris, University of Washington Skye Bender-deMoll, University of Washington For citation information, type citation("network"). Type help("network-package") to get started. networkDynamic: version 0.10.1, created on 2020-01-16 Copyright (c) 2020, Carter T. Butts, University of California -- Irvine Ayn Leslie-Cook, University of Washington Pavel N. Krivitsky, University of Wollongong Skye Bender-deMoll, University of Washington with contributions from Zack Almquist, University of California -- Irvine David R. Hunter, Penn State University Li Wang Kirk Li, University of Washington Steven M. Goodreau, University of Washington Jeffrey Horner Martina Morris, University of Washington Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("networkDynamic"). Loading required package: tergm Loading required package: ergm ergm: version 3.10.4, created on 2019-06-10 Copyright (c) 2019, Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Carter T. Butts, University of California -- Irvine Steven M. Goodreau, University of Washington Pavel N. Krivitsky, University of Wollongong Martina Morris, University of Washington with contributions from Li Wang Kirk Li, University of Washington Skye Bender-deMoll, University of Washington Chad Klumb Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("ergm"). NOTE: Versions before 3.6.1 had a bug in the implementation of the bd() constriant which distorted the sampled distribution somewhat. In addition, Sampson's Monks datasets had mislabeled vertices. See the NEWS and the documentation for more details. NOTE: Some common term arguments pertaining to vertex attribute and level selection have changed in 3.10.0. See terms help for more details. Use 'options(ergm.term=list(version="3.9.4"))' to use old behavior. Error: package or namespace load failed for 'tergm' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace 'nlme' 3.1-137 is being loaded, but >= 3.1.139 is required Failed with error: 'package 'tergm' could not be loaded' Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace 'nlme' 3.1-137 is being loaded, but >= 3.1.139 is required Calls: test_check ... tryCatch -> tryCatchList -> tryCatchOne -> Execution halted ** running tests for arch 'x64' ... [4s] ERROR Running 'test-all.R' [4s] Running the tests in 'tests/test-all.R' failed. Complete output: > library(testthat) > test_check("EpiModel") Loading required package: EpiModel Loading required package: deSolve Loading required package: networkDynamic Loading required package: network network: Classes for Relational Data Version 1.16.0 created on 2019-11-30. copyright (c) 2005, Carter T. Butts, University of California-Irvine Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Martina Morris, University of Washington Skye Bender-deMoll, University of Washington For citation information, type citation("network"). Type help("network-package") to get started. networkDynamic: version 0.10.1, created on 2020-01-16 Copyright (c) 2020, Carter T. Butts, University of California -- Irvine Ayn Leslie-Cook, University of Washington Pavel N. Krivitsky, University of Wollongong Skye Bender-deMoll, University of Washington with contributions from Zack Almquist, University of California -- Irvine David R. Hunter, Penn State University Li Wang Kirk Li, University of Washington Steven M. Goodreau, University of Washington Jeffrey Horner Martina Morris, University of Washington Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("networkDynamic"). Loading required package: tergm Loading required package: ergm ergm: version 3.10.4, created on 2019-06-10 Copyright (c) 2019, Mark S. Handcock, University of California -- Los Angeles David R. Hunter, Penn State University Carter T. Butts, University of California -- Irvine Steven M. Goodreau, University of Washington Pavel N. Krivitsky, University of Wollongong Martina Morris, University of Washington with contributions from Li Wang Kirk Li, University of Washington Skye Bender-deMoll, University of Washington Chad Klumb Based on "statnet" project software (statnet.org). For license and citation information see statnet.org/attribution or type citation("ergm"). NOTE: Versions before 3.6.1 had a bug in the implementation of the bd() constriant which distorted the sampled distribution somewhat. In addition, Sampson's Monks datasets had mislabeled vertices. See the NEWS and the documentation for more details. NOTE: Some common term arguments pertaining to vertex attribute and level selection have changed in 3.10.0. See terms help for more details. Use 'options(ergm.term=list(version="3.9.4"))' to use old behavior. Error: package or namespace load failed for 'tergm' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace 'nlme' 3.1-137 is being loaded, but >= 3.1.139 is required Failed with error: 'package 'tergm' could not be loaded' Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace 'nlme' 3.1-137 is being loaded, but >= 3.1.139 is required Calls: test_check ... tryCatch -> tryCatchList -> tryCatchOne -> Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [2s] OK * checking PDF version of manual ... OK * DONE Status: 4 ERRORs, 2 WARNINGs