* using log directory 'd:/Rcompile/CRANpkg/local/3.5/EpiILM.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'EpiILM/DESCRIPTION' ... OK * this is package 'EpiILM' version '1.5' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'EpiILM' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [14s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [35s] OK ** running examples for arch 'x64' ... [38s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [16s] OK Running 'EpiILM.network.R' [8s] Comparing 'EpiILM.network.Rout' to 'EpiILM.network.Rout.save' ...19801,19838c19801,19838 < [1,] 1 0 2 2 2 124 367 2 0 0 0 0 0 < [2,] 1 0 2 2 2 123 363 7 0 0 0 0 0 < [3,] 1 0 2 2 2 124 363 6 0 0 0 0 0 < [4,] 1 0 2 2 2 119 368 6 0 0 0 0 0 < [5,] 1 0 2 2 2 124 363 6 0 0 0 0 0 < [6,] 1 0 2 2 2 120 368 5 0 0 0 0 0 < [7,] 1 0 2 2 2 115 375 3 0 0 0 0 0 < [8,] 1 0 2 2 2 121 368 4 0 0 0 0 0 < [9,] 1 0 2 2 2 121 371 1 0 0 0 0 0 < [10,] 1 0 2 2 2 122 366 5 0 0 0 0 0 < [11,] 1 0 2 2 2 121 367 5 0 0 0 0 0 < [12,] 1 0 2 2 2 122 365 6 0 0 0 0 0 < [13,] 1 0 2 2 2 118 367 8 0 0 0 0 0 < [14,] 1 0 2 2 2 115 373 5 0 0 0 0 0 < [15,] 1 0 2 2 2 114 372 7 0 0 0 0 0 < [16,] 1 0 2 2 2 120 369 4 0 0 0 0 0 < [17,] 1 0 2 2 2 119 373 1 0 0 0 0 0 < [18,] 1 0 2 2 2 120 371 2 0 0 0 0 0 < [19,] 1 0 2 2 2 119 371 3 0 0 0 0 0 < [20,] 1 0 2 2 2 125 363 5 0 0 0 0 0 < [21,] 1 0 2 2 2 119 371 3 0 0 0 0 0 < [22,] 1 0 2 2 2 123 366 4 0 0 0 0 0 < [23,] 1 0 2 2 2 118 367 8 0 0 0 0 0 < [24,] 1 0 2 2 2 124 366 3 0 0 0 0 0 < [25,] 1 0 2 2 2 121 366 6 0 0 0 0 0 < [26,] 1 0 2 2 2 125 363 5 0 0 0 0 0 < [27,] 1 0 2 2 2 124 364 5 0 0 0 0 0 < [28,] 1 0 2 2 2 119 367 7 0 0 0 0 0 < [29,] 1 0 2 2 2 126 365 2 0 0 0 0 0 < [30,] 1 0 2 2 2 119 366 8 0 0 0 0 0 < [31,] 1 0 2 2 2 120 369 4 0 0 0 0 0 < [32,] 1 0 2 2 2 121 369 3 0 0 0 0 0 < [33,] 1 0 2 2 2 124 365 4 0 0 0 0 0 < [34,] 1 0 2 2 2 121 369 3 0 0 0 0 0 < [35,] 1 0 2 2 2 118 370 5 0 0 0 0 0 < [36,] 1 0 2 2 2 123 366 4 0 0 0 0 0 < [37,] 1 0 2 2 2 127 364 2 0 0 0 0 0 < [38,] 1 0 2 2 2 117 371 5 0 0 0 0 0 --- > [1,] 1 0 2 2 2 119 370 4 0 0 0 0 0 > [2,] 1 0 2 2 2 120 369 4 0 0 0 0 0 > [3,] 1 0 2 2 2 122 368 3 0 0 0 0 0 > [4,] 1 0 2 2 2 117 371 5 0 0 0 0 0 > [5,] 1 0 2 2 2 125 363 5 0 0 0 0 0 > [6,] 1 0 2 2 2 120 372 1 0 0 0 0 0 > [7,] 1 0 2 2 2 119 368 6 0 0 0 0 0 > [8,] 1 0 2 2 2 120 369 4 0 0 0 0 0 > [9,] 1 0 2 2 2 122 367 4 0 0 0 0 0 > [10,] 1 0 2 2 2 111 377 5 0 0 0 0 0 > [11,] 1 0 2 2 2 125 361 7 0 0 0 0 0 > [12,] 1 0 2 2 2 114 373 6 0 0 0 0 0 > [13,] 1 0 2 2 2 116 374 3 0 0 0 0 0 > [14,] 1 0 2 2 2 114 374 5 0 0 0 0 0 > [15,] 1 0 2 2 2 119 369 5 0 0 0 0 0 > [16,] 1 0 2 2 2 112 372 9 0 0 0 0 0 > [17,] 1 0 2 2 2 120 365 8 0 0 0 0 0 > [18,] 1 0 2 2 2 122 368 3 0 0 0 0 0 > [19,] 1 0 2 2 2 127 362 4 0 0 0 0 0 > [20,] 1 0 2 2 2 119 368 6 0 0 0 0 0 > [21,] 1 0 2 2 2 115 372 6 0 0 0 0 0 > [22,] 1 0 2 2 2 123 368 2 0 0 0 0 0 > [23,] 1 0 2 2 2 122 366 5 0 0 0 0 0 > [24,] 1 0 2 2 2 122 366 5 0 0 0 0 0 > [25,] 1 0 2 2 2 126 364 3 0 0 0 0 0 > [26,] 1 0 2 2 2 122 365 6 0 0 0 0 0 > [27,] 1 0 2 2 2 116 371 6 0 0 0 0 0 > [28,] 1 0 2 2 2 123 365 5 0 0 0 0 0 > [29,] 1 0 2 2 2 123 365 5 0 0 0 0 0 > [30,] 1 0 2 2 2 118 370 5 0 0 0 0 0 > [31,] 1 0 2 2 2 124 364 5 0 0 0 0 0 > [32,] 1 0 2 2 2 121 368 4 0 0 0 0 0 > [33,] 1 0 2 2 2 118 369 6 0 0 0 0 0 > [34,] 1 0 2 2 2 123 366 4 0 0 0 0 0 > [35,] 1 0 2 2 2 117 371 5 0 0 0 0 0 > [36,] 1 0 2 2 2 122 365 6 0 0 0 0 0 > [37,] 1 0 2 2 2 121 366 6 0 0 0 0 0 > [38,] 1 0 2 2 2 124 364 5 0 0 0 0 0 19840,19850c19840,19850 < [40,] 1 0 2 2 2 114 373 6 0 0 0 0 0 < [41,] 1 0 2 2 2 113 373 7 0 0 0 0 0 < [42,] 1 0 2 2 2 119 371 3 0 0 0 0 0 < [43,] 1 0 2 2 2 121 365 7 0 0 0 0 0 < [44,] 1 0 2 2 2 118 368 7 0 0 0 0 0 < [45,] 1 0 2 2 2 121 366 6 0 0 0 0 0 < [46,] 1 0 2 2 2 118 370 5 0 0 0 0 0 < [47,] 1 0 2 2 2 123 365 5 0 0 0 0 0 < [48,] 1 0 2 2 2 119 366 8 0 0 0 0 0 < [49,] 1 0 2 2 2 122 368 3 0 0 0 0 0 < [50,] 1 0 2 2 2 123 368 2 0 0 0 0 0 --- > [40,] 1 0 2 2 2 121 369 3 0 0 0 0 0 > [41,] 1 0 2 2 2 121 364 8 0 0 0 0 0 > [42,] 1 0 2 2 2 123 361 9 0 0 0 0 0 > [43,] 1 0 2 2 2 114 374 5 0 0 0 0 0 > [44,] 1 0 2 2 2 117 371 5 0 0 0 0 0 > [45,] 1 0 2 2 2 118 369 6 0 0 0 0 0 > [46,] 1 0 2 2 2 121 366 6 0 0 0 0 0 > [47,] 1 0 2 2 2 122 366 5 0 0 0 0 0 > [48,] 1 0 2 2 2 121 366 6 0 0 0 0 0 > [49,] 1 0 2 2 2 123 367 3 0 0 0 0 0 > [50,] 1 0 2 2 2 121 369 3 0 0 0 0 0 20037c20037 < [2,] 53 280 0 0 0 0 0 0 0 0 0 0 --- > [2,] 53 279 1 0 0 0 0 0 0 0 0 0 20039c20039 < [4,] 53 280 0 0 0 0 0 0 0 0 0 0 --- > [4,] 53 279 1 0 0 0 0 0 0 0 0 0 20049c20049 < [14,] 53 279 1 0 0 0 0 0 0 0 0 0 --- > [14,] 53 278 2 0 0 0 0 0 0 0 0 0 20051,20054c20051,20054 < [16,] 53 279 1 0 0 0 0 0 0 0 0 0 < [17,] 53 279 1 0 0 0 0 0 0 0 0 0 < [18,] 53 280 0 0 0 0 0 0 0 0 0 0 < [19,] 53 279 1 0 0 0 0 0 0 0 0 0 --- > [16,] 53 277 3 0 0 0 0 0 0 0 0 0 > [17,] 53 280 0 0 0 0 0 0 0 0 0 0 > [18,] 53 277 3 0 0 0 0 0 0 0 0 0 > [19,] 53 278 2 0 0 0 0 0 0 0 0 0 20057,20059c20057,20059 < [22,] 53 279 1 0 0 0 0 0 0 0 0 0 < [23,] 53 280 0 0 0 0 0 0 0 0 0 0 < [24,] 53 277 3 0 0 0 0 0 0 0 0 0 --- > [22,] 53 280 0 0 0 0 0 0 0 0 0 0 > [23,] 53 278 2 0 0 0 0 0 0 0 0 0 > [24,] 53 280 0 0 0 0 0 0 0 0 0 0 20063,20064c20063,20064 < [28,] 53 280 0 0 0 0 0 0 0 0 0 0 < [29,] 53 279 1 0 0 0 0 0 0 0 0 0 --- > [28,] 53 278 2 0 0 0 0 0 0 0 0 0 > [29,] 53 280 0 0 0 0 0 0 0 0 0 0 20067,20069c20067,20069 < [32,] 53 280 0 0 0 0 0 0 0 0 0 0 < [33,] 53 279 1 0 0 0 0 0 0 0 0 0 < [34,] 53 279 1 0 0 0 0 0 0 0 0 0 --- > [32,] 53 279 1 0 0 0 0 0 0 0 0 0 > [33,] 53 278 2 0 0 0 0 0 0 0 0 0 > [34,] 53 280 0 0 0 0 0 0 0 0 0 0 20071c20071 < [36,] 53 280 0 0 0 0 0 0 0 0 0 0 --- > [36,] 53 278 2 0 0 0 0 0 0 0 0 0 20073,20080c20073,20080 < [38,] 53 279 1 0 0 0 0 0 0 0 0 0 < [39,] 53 279 1 0 0 0 0 0 0 0 0 0 < [40,] 53 280 0 0 0 0 0 0 0 0 0 0 < [41,] 53 277 3 0 0 0 0 0 0 0 0 0 < [42,] 53 279 1 0 0 0 0 0 0 0 0 0 < [43,] 53 280 0 0 0 0 0 0 0 0 0 0 < [44,] 53 280 0 0 0 0 0 0 0 0 0 0 < [45,] 53 279 1 0 0 0 0 0 0 0 0 0 --- > [38,] 53 280 0 0 0 0 0 0 0 0 0 0 > [39,] 53 278 2 0 0 0 0 0 0 0 0 0 > [40,] 53 279 1 0 0 0 0 0 0 0 0 0 > [41,] 53 279 1 0 0 0 0 0 0 0 0 0 > [42,] 53 280 0 0 0 0 0 0 0 0 0 0 > [43,] 53 279 1 0 0 0 0 0 0 0 0 0 > [44,] 53 279 1 0 0 0 0 0 0 0 0 0 > [45,] 53 280 0 0 0 0 0 0 0 0 0 0 Running 'EpiILM.spatial.R' [6s] Comparing 'EpiILM.spatial.Rout' to 'EpiILM.spatial.Rout.save' ...483,532c483,532 < [1,] 1 1 3 12 19 40 50 38 31 19 < [2,] 1 2 7 18 24 46 53 39 26 12 < [3,] 1 2 4 8 22 30 50 44 27 23 < [4,] 1 2 7 19 30 41 50 37 21 11 < [5,] 1 1 3 13 26 31 55 50 23 19 < [6,] 1 1 3 13 23 35 42 42 31 21 < [7,] 1 1 2 3 13 12 28 52 48 40 < [8,] 1 1 5 9 21 44 51 44 25 14 < [9,] 1 4 12 21 48 57 43 16 25 8 < [10,] 1 1 6 9 18 39 56 47 33 17 < [11,] 1 0 0 0 2 9 11 27 43 55 < [12,] 1 0 0 0 0 0 0 1 1 0 < [13,] 1 2 5 10 18 34 42 45 37 22 < [14,] 1 1 8 20 37 42 46 35 21 11 < [15,] 1 4 8 19 38 49 46 30 22 8 < [16,] 1 2 6 25 49 66 51 20 20 4 < [17,] 1 2 6 15 23 56 65 29 26 16 < [18,] 1 5 13 22 43 49 48 28 16 9 < [19,] 1 3 6 12 22 36 47 35 30 29 < [20,] 1 4 15 16 41 64 54 15 16 10 < [21,] 1 9 23 42 80 54 25 10 4 3 < [22,] 1 0 2 8 19 33 42 48 35 25 < [23,] 1 1 5 7 25 38 44 45 39 12 < [24,] 1 2 2 8 17 32 37 42 48 27 < [25,] 1 2 4 11 15 41 58 50 24 16 < [26,] 1 0 4 11 25 49 58 46 26 7 < [27,] 1 5 14 19 33 35 51 29 22 16 < [28,] 1 5 15 40 56 69 47 9 7 2 < [29,] 1 1 3 3 16 28 30 41 50 31 < [30,] 1 1 3 9 21 33 50 61 29 11 < [31,] 1 3 6 18 33 51 49 30 26 13 < [32,] 1 4 8 17 33 32 33 43 27 17 < [33,] 1 0 1 1 2 1 1 3 5 8 < [34,] 1 2 5 20 30 58 47 38 24 9 < [35,] 1 4 7 15 40 43 49 31 22 16 < [36,] 1 3 4 12 21 41 43 48 26 17 < [37,] 1 5 12 29 30 38 40 45 22 13 < [38,] 1 1 4 11 22 32 39 42 40 32 < [39,] 1 3 9 15 24 40 51 43 23 14 < [40,] 1 3 11 21 46 58 33 31 15 7 < [41,] 1 1 5 14 17 25 43 47 33 26 < [42,] 1 2 6 17 31 45 46 36 28 9 < [43,] 1 3 8 17 24 38 42 52 30 15 < [44,] 1 0 1 0 0 1 2 0 2 2 < [45,] 1 1 3 3 2 10 13 23 31 25 < [46,] 1 2 4 8 22 40 46 39 32 22 < [47,] 1 4 10 22 41 60 43 26 15 12 < [48,] 1 1 4 10 25 31 58 47 34 16 < [49,] 1 3 13 24 46 51 37 24 15 9 < [50,] 1 2 8 21 39 56 45 24 20 13 --- > [1,] 1 1 3 15 25 47 58 40 24 12 > [2,] 1 2 3 3 4 7 7 12 9 19 > [3,] 1 0 0 0 0 0 0 0 0 0 > [4,] 1 2 7 12 33 45 55 34 28 14 > [5,] 1 1 5 8 16 40 50 35 31 23 > [6,] 1 2 3 12 16 41 51 48 25 19 > [7,] 1 1 6 19 37 56 48 24 19 12 > [8,] 1 0 4 10 15 26 41 50 42 33 > [9,] 1 1 2 6 20 34 47 47 34 17 > [10,] 1 2 8 20 30 37 47 35 37 13 > [11,] 1 2 4 9 18 22 31 39 33 31 > [12,] 1 4 3 13 22 26 39 31 32 25 > [13,] 1 0 3 11 21 35 53 42 29 17 > [14,] 1 2 7 10 29 48 50 37 21 13 > [15,] 1 2 9 16 38 55 47 29 23 7 > [16,] 1 1 4 8 14 23 29 46 40 24 > [17,] 1 5 6 19 40 54 51 32 20 12 > [18,] 1 1 2 11 28 52 50 34 26 13 > [19,] 1 2 6 15 30 54 61 34 17 14 > [20,] 1 3 8 15 24 34 46 42 26 16 > [21,] 1 2 4 9 18 35 51 46 34 26 > [22,] 1 2 5 7 18 42 50 41 30 21 > [23,] 1 2 0 2 3 5 6 6 13 14 > [24,] 1 5 12 24 46 55 36 26 22 6 > [25,] 1 2 5 15 35 47 55 39 17 18 > [26,] 1 2 8 18 32 32 52 47 25 13 > [27,] 1 2 4 11 17 43 44 45 27 17 > [28,] 1 1 2 5 12 22 41 50 40 26 > [29,] 1 2 8 19 40 57 57 31 9 10 > [30,] 1 2 10 20 45 46 48 30 13 11 > [31,] 1 3 11 20 28 46 48 40 18 12 > [32,] 1 2 7 16 28 42 60 43 21 13 > [33,] 1 3 14 28 48 56 47 20 10 4 > [34,] 1 2 12 26 54 64 39 18 11 8 > [35,] 1 0 2 2 16 23 32 45 40 21 > [36,] 1 3 2 7 19 33 46 43 31 21 > [37,] 1 2 4 4 8 13 29 47 38 38 > [38,] 1 1 1 7 15 25 37 38 47 19 > [39,] 1 4 14 23 42 44 42 27 21 9 > [40,] 1 3 10 30 46 48 53 21 13 8 > [41,] 1 0 2 5 11 24 49 49 33 25 > [42,] 1 3 7 24 37 48 48 30 23 11 > [43,] 1 0 0 3 7 17 25 33 57 42 > [44,] 1 2 8 23 43 51 53 24 18 7 > [45,] 1 2 4 7 20 47 50 31 30 14 > [46,] 1 1 4 7 17 32 56 50 35 18 > [47,] 1 1 5 12 23 37 49 51 26 20 > [48,] 1 3 5 16 41 43 47 33 23 12 > [49,] 1 6 15 26 36 54 43 33 17 6 > [50,] 1 0 0 0 0 0 0 1 0 0 ** running tests for arch 'x64' ... [18s] OK Running 'EpiILM.network.R' [8s] Comparing 'EpiILM.network.Rout' to 'EpiILM.network.Rout.save' ...19801,19838c19801,19838 < [1,] 1 0 2 2 2 124 367 2 0 0 0 0 0 < [2,] 1 0 2 2 2 123 363 7 0 0 0 0 0 < [3,] 1 0 2 2 2 124 363 6 0 0 0 0 0 < [4,] 1 0 2 2 2 119 368 6 0 0 0 0 0 < [5,] 1 0 2 2 2 124 363 6 0 0 0 0 0 < [6,] 1 0 2 2 2 120 368 5 0 0 0 0 0 < [7,] 1 0 2 2 2 115 375 3 0 0 0 0 0 < [8,] 1 0 2 2 2 121 368 4 0 0 0 0 0 < [9,] 1 0 2 2 2 121 371 1 0 0 0 0 0 < [10,] 1 0 2 2 2 122 366 5 0 0 0 0 0 < [11,] 1 0 2 2 2 121 367 5 0 0 0 0 0 < [12,] 1 0 2 2 2 122 365 6 0 0 0 0 0 < [13,] 1 0 2 2 2 118 367 8 0 0 0 0 0 < [14,] 1 0 2 2 2 115 373 5 0 0 0 0 0 < [15,] 1 0 2 2 2 114 372 7 0 0 0 0 0 < [16,] 1 0 2 2 2 120 369 4 0 0 0 0 0 < [17,] 1 0 2 2 2 119 373 1 0 0 0 0 0 < [18,] 1 0 2 2 2 120 371 2 0 0 0 0 0 < [19,] 1 0 2 2 2 119 371 3 0 0 0 0 0 < [20,] 1 0 2 2 2 125 363 5 0 0 0 0 0 < [21,] 1 0 2 2 2 119 371 3 0 0 0 0 0 < [22,] 1 0 2 2 2 123 366 4 0 0 0 0 0 < [23,] 1 0 2 2 2 118 367 8 0 0 0 0 0 < [24,] 1 0 2 2 2 124 366 3 0 0 0 0 0 < [25,] 1 0 2 2 2 121 366 6 0 0 0 0 0 < [26,] 1 0 2 2 2 125 363 5 0 0 0 0 0 < [27,] 1 0 2 2 2 124 364 5 0 0 0 0 0 < [28,] 1 0 2 2 2 119 367 7 0 0 0 0 0 < [29,] 1 0 2 2 2 126 365 2 0 0 0 0 0 < [30,] 1 0 2 2 2 119 366 8 0 0 0 0 0 < [31,] 1 0 2 2 2 120 369 4 0 0 0 0 0 < [32,] 1 0 2 2 2 121 369 3 0 0 0 0 0 < [33,] 1 0 2 2 2 124 365 4 0 0 0 0 0 < [34,] 1 0 2 2 2 121 369 3 0 0 0 0 0 < [35,] 1 0 2 2 2 118 370 5 0 0 0 0 0 < [36,] 1 0 2 2 2 123 366 4 0 0 0 0 0 < [37,] 1 0 2 2 2 127 364 2 0 0 0 0 0 < [38,] 1 0 2 2 2 117 371 5 0 0 0 0 0 --- > [1,] 1 0 2 2 2 119 370 4 0 0 0 0 0 > [2,] 1 0 2 2 2 120 369 4 0 0 0 0 0 > [3,] 1 0 2 2 2 122 368 3 0 0 0 0 0 > [4,] 1 0 2 2 2 117 371 5 0 0 0 0 0 > [5,] 1 0 2 2 2 125 363 5 0 0 0 0 0 > [6,] 1 0 2 2 2 120 372 1 0 0 0 0 0 > [7,] 1 0 2 2 2 119 368 6 0 0 0 0 0 > [8,] 1 0 2 2 2 120 369 4 0 0 0 0 0 > [9,] 1 0 2 2 2 122 367 4 0 0 0 0 0 > [10,] 1 0 2 2 2 111 377 5 0 0 0 0 0 > [11,] 1 0 2 2 2 125 361 7 0 0 0 0 0 > [12,] 1 0 2 2 2 114 373 6 0 0 0 0 0 > [13,] 1 0 2 2 2 116 374 3 0 0 0 0 0 > [14,] 1 0 2 2 2 114 374 5 0 0 0 0 0 > [15,] 1 0 2 2 2 119 369 5 0 0 0 0 0 > [16,] 1 0 2 2 2 112 372 9 0 0 0 0 0 > [17,] 1 0 2 2 2 120 365 8 0 0 0 0 0 > [18,] 1 0 2 2 2 122 368 3 0 0 0 0 0 > [19,] 1 0 2 2 2 127 362 4 0 0 0 0 0 > [20,] 1 0 2 2 2 119 368 6 0 0 0 0 0 > [21,] 1 0 2 2 2 115 372 6 0 0 0 0 0 > [22,] 1 0 2 2 2 123 368 2 0 0 0 0 0 > [23,] 1 0 2 2 2 122 366 5 0 0 0 0 0 > [24,] 1 0 2 2 2 122 366 5 0 0 0 0 0 > [25,] 1 0 2 2 2 126 364 3 0 0 0 0 0 > [26,] 1 0 2 2 2 122 365 6 0 0 0 0 0 > [27,] 1 0 2 2 2 116 371 6 0 0 0 0 0 > [28,] 1 0 2 2 2 123 365 5 0 0 0 0 0 > [29,] 1 0 2 2 2 123 365 5 0 0 0 0 0 > [30,] 1 0 2 2 2 118 370 5 0 0 0 0 0 > [31,] 1 0 2 2 2 124 364 5 0 0 0 0 0 > [32,] 1 0 2 2 2 121 368 4 0 0 0 0 0 > [33,] 1 0 2 2 2 118 369 6 0 0 0 0 0 > [34,] 1 0 2 2 2 123 366 4 0 0 0 0 0 > [35,] 1 0 2 2 2 117 371 5 0 0 0 0 0 > [36,] 1 0 2 2 2 122 365 6 0 0 0 0 0 > [37,] 1 0 2 2 2 121 366 6 0 0 0 0 0 > [38,] 1 0 2 2 2 124 364 5 0 0 0 0 0 19840,19850c19840,19850 < [40,] 1 0 2 2 2 114 373 6 0 0 0 0 0 < [41,] 1 0 2 2 2 113 373 7 0 0 0 0 0 < [42,] 1 0 2 2 2 119 371 3 0 0 0 0 0 < [43,] 1 0 2 2 2 121 365 7 0 0 0 0 0 < [44,] 1 0 2 2 2 118 368 7 0 0 0 0 0 < [45,] 1 0 2 2 2 121 366 6 0 0 0 0 0 < [46,] 1 0 2 2 2 118 370 5 0 0 0 0 0 < [47,] 1 0 2 2 2 123 365 5 0 0 0 0 0 < [48,] 1 0 2 2 2 119 366 8 0 0 0 0 0 < [49,] 1 0 2 2 2 122 368 3 0 0 0 0 0 < [50,] 1 0 2 2 2 123 368 2 0 0 0 0 0 --- > [40,] 1 0 2 2 2 121 369 3 0 0 0 0 0 > [41,] 1 0 2 2 2 121 364 8 0 0 0 0 0 > [42,] 1 0 2 2 2 123 361 9 0 0 0 0 0 > [43,] 1 0 2 2 2 114 374 5 0 0 0 0 0 > [44,] 1 0 2 2 2 117 371 5 0 0 0 0 0 > [45,] 1 0 2 2 2 118 369 6 0 0 0 0 0 > [46,] 1 0 2 2 2 121 366 6 0 0 0 0 0 > [47,] 1 0 2 2 2 122 366 5 0 0 0 0 0 > [48,] 1 0 2 2 2 121 366 6 0 0 0 0 0 > [49,] 1 0 2 2 2 123 367 3 0 0 0 0 0 > [50,] 1 0 2 2 2 121 369 3 0 0 0 0 0 20037c20037 < [2,] 53 280 0 0 0 0 0 0 0 0 0 0 --- > [2,] 53 279 1 0 0 0 0 0 0 0 0 0 20039c20039 < [4,] 53 280 0 0 0 0 0 0 0 0 0 0 --- > [4,] 53 279 1 0 0 0 0 0 0 0 0 0 20049c20049 < [14,] 53 279 1 0 0 0 0 0 0 0 0 0 --- > [14,] 53 278 2 0 0 0 0 0 0 0 0 0 20051,20054c20051,20054 < [16,] 53 279 1 0 0 0 0 0 0 0 0 0 < [17,] 53 279 1 0 0 0 0 0 0 0 0 0 < [18,] 53 280 0 0 0 0 0 0 0 0 0 0 < [19,] 53 279 1 0 0 0 0 0 0 0 0 0 --- > [16,] 53 277 3 0 0 0 0 0 0 0 0 0 > [17,] 53 280 0 0 0 0 0 0 0 0 0 0 > [18,] 53 277 3 0 0 0 0 0 0 0 0 0 > [19,] 53 278 2 0 0 0 0 0 0 0 0 0 20057,20059c20057,20059 < [22,] 53 279 1 0 0 0 0 0 0 0 0 0 < [23,] 53 280 0 0 0 0 0 0 0 0 0 0 < [24,] 53 277 3 0 0 0 0 0 0 0 0 0 --- > [22,] 53 280 0 0 0 0 0 0 0 0 0 0 > [23,] 53 278 2 0 0 0 0 0 0 0 0 0 > [24,] 53 280 0 0 0 0 0 0 0 0 0 0 20063,20064c20063,20064 < [28,] 53 280 0 0 0 0 0 0 0 0 0 0 < [29,] 53 279 1 0 0 0 0 0 0 0 0 0 --- > [28,] 53 278 2 0 0 0 0 0 0 0 0 0 > [29,] 53 280 0 0 0 0 0 0 0 0 0 0 20067,20069c20067,20069 < [32,] 53 280 0 0 0 0 0 0 0 0 0 0 < [33,] 53 279 1 0 0 0 0 0 0 0 0 0 < [34,] 53 279 1 0 0 0 0 0 0 0 0 0 --- > [32,] 53 279 1 0 0 0 0 0 0 0 0 0 > [33,] 53 278 2 0 0 0 0 0 0 0 0 0 > [34,] 53 280 0 0 0 0 0 0 0 0 0 0 20071c20071 < [36,] 53 280 0 0 0 0 0 0 0 0 0 0 --- > [36,] 53 278 2 0 0 0 0 0 0 0 0 0 20073,20080c20073,20080 < [38,] 53 279 1 0 0 0 0 0 0 0 0 0 < [39,] 53 279 1 0 0 0 0 0 0 0 0 0 < [40,] 53 280 0 0 0 0 0 0 0 0 0 0 < [41,] 53 277 3 0 0 0 0 0 0 0 0 0 < [42,] 53 279 1 0 0 0 0 0 0 0 0 0 < [43,] 53 280 0 0 0 0 0 0 0 0 0 0 < [44,] 53 280 0 0 0 0 0 0 0 0 0 0 < [45,] 53 279 1 0 0 0 0 0 0 0 0 0 --- > [38,] 53 280 0 0 0 0 0 0 0 0 0 0 > [39,] 53 278 2 0 0 0 0 0 0 0 0 0 > [40,] 53 279 1 0 0 0 0 0 0 0 0 0 > [41,] 53 279 1 0 0 0 0 0 0 0 0 0 > [42,] 53 280 0 0 0 0 0 0 0 0 0 0 > [43,] 53 279 1 0 0 0 0 0 0 0 0 0 > [44,] 53 279 1 0 0 0 0 0 0 0 0 0 > [45,] 53 280 0 0 0 0 0 0 0 0 0 0 Running 'EpiILM.spatial.R' [8s] Comparing 'EpiILM.spatial.Rout' to 'EpiILM.spatial.Rout.save' ...483,532c483,532 < [1,] 1 1 3 12 19 40 50 38 31 19 < [2,] 1 2 7 18 24 46 53 39 26 12 < [3,] 1 2 4 8 22 30 50 44 27 23 < [4,] 1 2 7 19 30 41 50 37 21 11 < [5,] 1 1 3 13 26 31 55 50 23 19 < [6,] 1 1 3 13 23 35 42 42 31 21 < [7,] 1 1 2 3 13 12 28 52 48 40 < [8,] 1 1 5 9 21 44 51 44 25 14 < [9,] 1 4 12 21 48 57 43 16 25 8 < [10,] 1 1 6 9 18 39 56 47 33 17 < [11,] 1 0 0 0 2 9 11 27 43 55 < [12,] 1 0 0 0 0 0 0 1 1 0 < [13,] 1 2 5 10 18 34 42 45 37 22 < [14,] 1 1 8 20 37 42 46 35 21 11 < [15,] 1 4 8 19 38 49 46 30 22 8 < [16,] 1 2 6 25 49 66 51 20 20 4 < [17,] 1 2 6 15 23 56 65 29 26 16 < [18,] 1 5 13 22 43 49 48 28 16 9 < [19,] 1 3 6 12 22 36 47 35 30 29 < [20,] 1 4 15 16 41 64 54 15 16 10 < [21,] 1 9 23 42 80 54 25 10 4 3 < [22,] 1 0 2 8 19 33 42 48 35 25 < [23,] 1 1 5 7 25 38 44 45 39 12 < [24,] 1 2 2 8 17 32 37 42 48 27 < [25,] 1 2 4 11 15 41 58 50 24 16 < [26,] 1 0 4 11 25 49 58 46 26 7 < [27,] 1 5 14 19 33 35 51 29 22 16 < [28,] 1 5 15 40 56 69 47 9 7 2 < [29,] 1 1 3 3 16 28 30 41 50 31 < [30,] 1 1 3 9 21 33 50 61 29 11 < [31,] 1 3 6 18 33 51 49 30 26 13 < [32,] 1 4 8 17 33 32 33 43 27 17 < [33,] 1 0 1 1 2 1 1 3 5 8 < [34,] 1 2 5 20 30 58 47 38 24 9 < [35,] 1 4 7 15 40 43 49 31 22 16 < [36,] 1 3 4 12 21 41 43 48 26 17 < [37,] 1 5 12 29 30 38 40 45 22 13 < [38,] 1 1 4 11 22 32 39 42 40 32 < [39,] 1 3 9 15 24 40 51 43 23 14 < [40,] 1 3 11 21 46 58 33 31 15 7 < [41,] 1 1 5 14 17 25 43 47 33 26 < [42,] 1 2 6 17 31 45 46 36 28 9 < [43,] 1 3 8 17 24 38 42 52 30 15 < [44,] 1 0 1 0 0 1 2 0 2 2 < [45,] 1 1 3 3 2 10 13 23 31 25 < [46,] 1 2 4 8 22 40 46 39 32 22 < [47,] 1 4 10 22 41 60 43 26 15 12 < [48,] 1 1 4 10 25 31 58 47 34 16 < [49,] 1 3 13 24 46 51 37 24 15 9 < [50,] 1 2 8 21 39 56 45 24 20 13 --- > [1,] 1 1 3 15 25 47 58 40 24 12 > [2,] 1 2 3 3 4 7 7 12 9 19 > [3,] 1 0 0 0 0 0 0 0 0 0 > [4,] 1 2 7 12 33 45 55 34 28 14 > [5,] 1 1 5 8 16 40 50 35 31 23 > [6,] 1 2 3 12 16 41 51 48 25 19 > [7,] 1 1 6 19 37 56 48 24 19 12 > [8,] 1 0 4 10 15 26 41 50 42 33 > [9,] 1 1 2 6 20 34 47 47 34 17 > [10,] 1 2 8 20 30 37 47 35 37 13 > [11,] 1 2 4 9 18 22 31 39 33 31 > [12,] 1 4 3 13 22 26 39 31 32 25 > [13,] 1 0 3 11 21 35 53 42 29 17 > [14,] 1 2 7 10 29 48 50 37 21 13 > [15,] 1 2 9 16 38 55 47 29 23 7 > [16,] 1 1 4 8 14 23 29 46 40 24 > [17,] 1 5 6 19 40 54 51 32 20 12 > [18,] 1 1 2 11 28 52 50 34 26 13 > [19,] 1 2 6 15 30 54 61 34 17 14 > [20,] 1 3 8 15 24 34 46 42 26 16 > [21,] 1 2 4 9 18 35 51 46 34 26 > [22,] 1 2 5 7 18 42 50 41 30 21 > [23,] 1 2 0 2 3 5 6 6 13 14 > [24,] 1 5 12 24 46 55 36 26 22 6 > [25,] 1 2 5 15 35 47 55 39 17 18 > [26,] 1 2 8 18 32 32 52 47 25 13 > [27,] 1 2 4 11 17 43 44 45 27 17 > [28,] 1 1 2 5 12 22 41 50 40 26 > [29,] 1 2 8 19 40 57 57 31 9 10 > [30,] 1 2 10 20 45 46 48 30 13 11 > [31,] 1 3 11 20 28 46 48 40 18 12 > [32,] 1 2 7 16 28 42 60 43 21 13 > [33,] 1 3 14 28 48 56 47 20 10 4 > [34,] 1 2 12 26 54 64 39 18 11 8 > [35,] 1 0 2 2 16 23 32 45 40 21 > [36,] 1 3 2 7 19 33 46 43 31 21 > [37,] 1 2 4 4 8 13 29 47 38 38 > [38,] 1 1 1 7 15 25 37 38 47 19 > [39,] 1 4 14 23 42 44 42 27 21 9 > [40,] 1 3 10 30 46 48 53 21 13 8 > [41,] 1 0 2 5 11 24 49 49 33 25 > [42,] 1 3 7 24 37 48 48 30 23 11 > [43,] 1 0 0 3 7 17 25 33 57 42 > [44,] 1 2 8 23 43 51 53 24 18 7 > [45,] 1 2 4 7 20 47 50 31 30 14 > [46,] 1 1 4 7 17 32 56 50 35 18 > [47,] 1 1 5 12 23 37 49 51 26 20 > [48,] 1 3 5 16 41 43 47 33 23 12 > [49,] 1 6 15 26 36 54 43 33 17 6 > [50,] 1 0 0 0 0 0 0 1 0 0 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [278s] OK * checking PDF version of manual ... OK * DONE Status: OK