MAP-Bayesian Estimation of PK Parameters
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Documentation for package ‘mapbayr’ version 0.7.3
Help Pages
| add_covariates | Data helpers |
| add_covariates.mrgmod | Data helpers |
| adm_0_cmt | Get zero-order infusion compartment from mrgsolve model |
| adm_cmt | Get administration compartment numbers from mrgsolve model |
| adm_lines | Data helpers |
| adm_lines.mrgmod | Data helpers |
| as.data.frame.mapbayests | Return the mapbay_tab as a data.frame |
| augment | Compute full PK profile prediction from mapbayr estimates. |
| augment.mapbayests | Compute full PK profile prediction from mapbayr estimates. |
| check_mapbayr_model | Check if model is valid for mapbayr |
| compute_ofv | Compute the objective function value |
| data_helpers | Data helpers |
| do_compute_ofv | Compute the objective function value |
| est001 | Estimation object |
| exdata | Example model and data |
| exmodel | Example model and data |
| exmodel_exdata | Example model and data |
| get_cov | Get content from object |
| get_cov.mapbayests | Get content from object |
| get_data | Get content from object |
| get_data.mapbayests | Get content from object |
| get_data.mrgmod | Get content from object |
| get_eta | Get content from object |
| get_eta.mapbayests | Get content from object |
| get_param | Get content from object |
| get_param.mapbayests | Get content from object |
| get_phi | Get content from object |
| get_phi.mapbayests | Get content from object |
| get_x | Get content from object |
| h | Compute the H matrix |
| hist.mapbayests | Plot posterior distribution of bayesian estimates |
| mapbayest | Estimate parameters (maximum a posteriori) |
| mbrest | Estimate parameters (maximum a posteriori) |
| merge_phi | Compare results to NONMEM .phi |
| obs_cmt | Get observation compartment numbers from mrgsolve model |
| obs_lines | Data helpers |
| obs_lines.mrgmod | Data helpers |
| plot.mapbayests | Plot predictions from mapbayests object |
| plot_phi | Compare results to NONMEM .phi |
| postprocess | Postprocess mapbayr |
| postprocess.optim | Postprocess mapbayr |
| postprocess.output | Postprocess mapbayr |
| preprocess.ofv | Preprocess model and data for ofv computation |
| preprocess.ofv.fix | Preprocess model and data for ofv computation |
| preprocess.ofv.id | Preprocess model and data for ofv computation |
| preprocess.optim | Pre-process: arguments for optimization function |
| print.mapbayests | Print a mapbayests object |
| qparam | Quick parameter update |
| read_nmphi | Compare results to NONMEM .phi |
| see_data | Data helpers |
| use_posterior | Use posterior estimation |
| vs_nonmem | Compare results to NONMEM .phi |