Estimation of Time Varying Reproduction Numbers and Restored Incidence Curves Using Variational Techniques


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Documentation for package ‘EpiInvert’ version 0.1.1

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EpiInvert 'EpiInvert' estimates the reproduction number Rt and a restored incidence curve from the original daily incidence curve and the serial interval distribution. EpiInvert also corrects the festive and weekly biases present in the registered daily incidence.
EpiInvert_plot 'EpiInvert_plot' plots the results obtained by EpiInvert
festives A dataset containing festive days in France, Germany, UK and the USA
incidence A dataset containing daily incidence of COVID-19 for France, Germany, UK and the USA
select_params 'select_params' function to select EpiInvert parameters
si_distr_data A dataset containing the values of a serial interval