Tools for Plant Ecophysiology & Modeling
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Documentation for package ‘photosynthesis’ version 2.0.3
Help Pages
| photosynthesis-package | 'photosynthesis' package |
| .get_gbc | Conductance to CO2 (umol / (m^2 s Pa)) |
| .get_gmc | Conductance to CO2 (umol / (m^2 s Pa)) |
| .get_gsc | Conductance to CO2 (umol / (m^2 s Pa)) |
| .get_gtc | Conductance to CO2 (umol / (m^2 s Pa)) |
| .get_guc | Conductance to CO2 (umol / (m^2 s Pa)) |
| analyze_sensitivity | Running 2-parameter sensitivity analyses |
| aq_response | Non-rectangular hyperbolic model of light responses |
| A_demand | CO2 supply and demand function (mol / m^2 s) |
| A_supply | CO2 supply and demand function (mol / m^2 s) |
| bake | Leaf parameter temperature responses |
| baked-class | S3 class baked |
| bake_par | S3 class bake_par |
| calculate_j | Inverse non-rectangular hyperbola for J_max calculation |
| calculate_jmax | Inverse non-rectangular hyperbola for J_max calculation |
| check_dependencies | Checking dependencies of photosynthesis |
| CO2_conductance | Conductance to CO2 (umol / (m^2 s Pa)) |
| compile_data | Compiling outputs from lists |
| compute_sensitivity | Computing measures of sensitivity |
| constants | S3 class constants |
| enviro_par | S3 class enviro_par |
| fit_aci_response | Fitting ACi curves |
| fit_aq_response | Fitting light responses of net CO2 assimilation |
| fit_gs_model | Fitting stomatal conductance models |
| fit_g_mc_variableJ | Fitting mesophyll conductance with the variable J method |
| fit_hydra_vuln_curve | Fitting hydraulic vulnerability curves |
| fit_many | Fitting many functions across groups |
| fit_PV_curve | Fitting pressure-volume curves |
| fit_r_light_kok | Estimating light respiration |
| fit_r_light_WalkerOrt | Estimating light respiration |
| fit_r_light_yin | Estimating light respiration |
| fit_t_response | Fitting temperature responses |
| FvCB | Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model |
| gc2gw | Convert g_c (mumol CO2/m^2/s/Pa) to g_w (mumol H2O /m^2/s/Pa) |
| gs_mod_ballberry | Stomatal conductance models |
| gs_mod_leuning | Stomatal conductance models |
| gs_mod_opti | Stomatal conductance models |
| gs_mod_optifull | Stomatal conductance models |
| gw2gc | Convert g_c (mumol CO2/m^2/s/Pa) to g_w (mumol H2O /m^2/s/Pa) |
| J | J: Rate of electron transport (umol/m^2/s) |
| leaf_par | S3 class leaf_par |
| make_bakepar | Make lists of parameters for 'photosynthesis' |
| make_constants | Make lists of parameters for 'photosynthesis' |
| make_enviropar | Make lists of parameters for 'photosynthesis' |
| make_leafpar | Make lists of parameters for 'photosynthesis' |
| make_parameters | Make lists of parameters for 'photosynthesis' |
| parameter_names | Get vector of parameter names |
| photo | Simulate C3 photosynthesis |
| photosynthesis | Simulate C3 photosynthesis |
| ppm2pa | Convert pressure from PPM to Pascals |
| print_graphs | Printing graphs to system |
| read_li6800 | Reading in LiCor files |
| temp_resp1 | Leaf parameter temperature responses |
| temp_resp2 | Leaf parameter temperature responses |
| t_response_arrhenius | Temperature response functions |
| t_response_arrhenius_kruse | Temperature response functions |
| t_response_arrhenius_medlyn | Temperature response functions |
| t_response_arrhenius_topt | Temperature response functions |
| t_response_calc_dS | Temperature response functions |
| t_response_calc_topt | Temperature response functions |
| t_response_heskel | Temperature response functions |
| t_response_mmrt | Temperature response functions |
| W_carbox | Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model |
| W_regen | Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model |
| W_tpu | Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model |